barSeed - Barley Seed Development Database

Probe CUST_23738_PI390587928

Source Contig U35_16988

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23738_PI390587928	Hv_44K_v2	CTACATATTCGTGTGATGTGGTATAATTTTGGCAGTTGATCATCACGTCTAAGCAAAAAA	984	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.400	1.916	1.167	0.694	0.287	0.362
Raw	1823.527	3827.507	2043.747	1927.337	283.777	379.656

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41585.6	2940	5e-22	2638 - 2692	100	55 / 55	plus
JLOC1	JLOC1_41585.5	2901	5e-22	2599 - 2653	100	55 / 55	plus
JLOC1	JLOC1_41585.4	2925	5e-22	2623 - 2677	100	55 / 55	plus
JLOC1	JLOC1_41585.3	2866	5e-22	2564 - 2618	100	55 / 55	plus
JLOC1	JLOC1_41585.2	3451	5e-22	3149 - 3203	100	55 / 55	plus
JLOC1	JLOC1_41585.1	2800	5e-22	2498 - 2552	100	55 / 55	plus
Harvest35	U35_16988	1056	3e-25	985 - 1044	100	60 / 60	plus

Contig Sequence (1056 bp)

>U35_16988 1056 Hv_44K_v2
GATGACACAAAACTTCTTACTAAGGTTGTAATTGAAGAGCTGACAAAACAGTTAAAGGAA
CTCATATTTGACAAGAACGGGAGACGCCCATTGCTGCAGCTACTTCACCCACTTTGCTCA
CGTTATCTGACTCCGACTGATTTGAGTTGTCTGAAGTACAGTGTGCCTTCCCTTATTTCA
AAGGATGAGGCATCAGAGGGTGCTGCTAAAGTTAACTTGGATAGTAAGTTGGATGATGTA
GCTGAAAAAGAACATGGGGGTTCAGAAGACACACTGGTTGCATCTGATAGCAAGAAGGAC
CCGTTTAAACGGAGGCAAGAACTGTTGGTGAAAAGCGAACTTTTCGAGGTTCTCATTGAG
ACTTGCATTGAAAATGTTGGAGAGTTACTTCGAGCAAACTTTGGCAAAGATGTATTATAT
GAGGTTGCTATAGGTGGAAAAAATAATGTCTTGGAGGGGGTCACCGACAGGATCCACGTG
CTTCACAATGCTATAGCTTCTGACGCAGCACGGCCGAGGACAGAGGATGTTGAGCATGCC
TTTGATAACTACCACTCGAGCCGCGTAATCAGAAAGATGGTACTTGATTGCCCTGCGTTT
GCCGCTACCCTATGGGAAAAAGCCCTCAAAGGGAAGTCCAAGTCATTTGCAGATGGATTC
AGCTCCAAGGTGGTGGCTGCCTATCTGGAATCTCCAGATTCCAAGGTGAAGGATCTTGCG
AAATCCGAGGTGCAGCCGCTCATCGACGGTGGCATGCTGAAGATTCCAGACCATAAAGCA
GCGGAAAAGAAGTGAGTCTTCTCTCGACGGTCCCCTCGCCATCGCCAGCAACACAAGCAG
GCCAAGGCGGTGTCCGTGCTTGCGTTTTGGATGAAAGAGTAATACATACATCCGCGTTCA
TCCTAGTTGAGGTGTATATTCAATTTTGTCACCGGATACCAGTGCTCAAAATACATGCCG
TACTGTCACTGGGGAAGTTTGCTGCTACATATTCGTGTGATGTGGTATAATTTTGGCAGT
TGATCATCACGTCTAAGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g61560.1	660	9e-131	protein\|expressed protein
Brachypodium v1_2	Bradi1g03030.1	660	3e-129
Arabidopsis v10	AT3G16810.1	641	1e-70	\| Symbols: APUM24, PUM24 \| pumilio 24 \| chr3:5723436-5727539 REVERSE LENGTH=641