barSeed - Barley Seed Development Database

Probe CUST_23733_PI390587928

Source Contig U35_28967

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23733_PI390587928	Hv_44K_v2	CAGAAGAAAAGTGTAGATGCTCTTATGAAGAAGTTTCTTGCAGAGAACTTTACAGCTATA	539	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56126.4	1719	2e-24	749 - 808	100	60 / 60	plus	None
JLOC1	JLOC1_36282.4	1942	8e-25	749 - 808	100	60 / 60	plus
JLOC1	JLOC1_36282.1	1790	8e-25	750 - 809	100	60 / 60	plus
Harvest21	ABC28102	599	3e-25	540 - 599	100	60 / 60	plus
Harvest35	U35_28967	599	3e-25	540 - 599	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_28967 599 Hv_44K_v2
TGCAGGAATTCGCACNGGGCGGCGCCCGTGCCCTCCGCGCGGNGGAGAGGAGACGACGAG
ACGCCTCTCCGCTGATCGTCCCTCGTCCGCCCCGGTTGCCCCATCCGCCTCCGCGGGTTC
CATGAACGGAGAAAAGTAGCGCCTAGTGGGACAAGAATGGTCACAGGAGCTGCTGTCACT
GCTCTAAGATGAGACTGAGGCTGCGTCTGCTTGTTCTGTGCTTGATGATAATCCTATTTG
TGGTTTACAACATGGCAAGCTACCAACGCAGACAGACGGCGTTGGATGAAGACGCTCCCC
CGTTTGATACGATGATGGAGTCTGACAGGGCTGCTGTTAAGGTATCTGGGACTGGGAGAG
CTACTGCCAAGGTGACACACAGAGCTGCTTCTACTGCTAGGGTCGGGTTTTTGCCTCATG
GTATAGTGGAGCCTTACTCCGACATGGAGCTCAAGCCACTATGGCTCACAAGAAGCGTTC
AGTCAGAGGAGCCTAACCAGAAAGACAGGTGCTTGATTGCTATCCCTGCTGGCATAAATC
AGAAGAAAAGTGTAGATGCTCTTATGAAGAAGTTTCTTGCAGAGAACTTTACAGCTATA

Homology of Contig U35_28967 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g24590.2	409	3e-52
Arabidopsis v10	None