barSeed - Barley Seed Development Database

Probe CUST_2372_PI390587928

Source Contig U35_6398

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2372_PI390587928	Hv_44K_v2	AGAGCAAGGTGGTGGGTGCGGTTTTAAATTGGGGCAATAAAAGTTTTTCACATCAAAAAA	1780	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.273	2.183	1.307	0.618	0.194	0.255
Raw	1101.404	1568.328	860.428	653.855	71.136	100.031

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13687	1851	3e-25	1781 - 1840	100	60 / 60	plus	ABC13687
Harvest35	U35_6398	1851	3e-25	1781 - 1840	100	60 / 60	plus

Contig Sequence (1851 bp)

>U35_6398 1851 Hv_44K_v2
GAGGTCCACCCCTTCCATTTCCGACAATCCCTCCCCGGGATCCCGCCGCACCAGCCCCCA
GACCCTCGACCGCGTCGGCGGCGGCGGCGGCGACCGAGCGCGCACGCCGCAGGATTCTCT
CGGCTACGCCATGGGCTGCTTCCTCTCATGCTTCCGCGGCCGCCCCGACCCTGCCGGCCG
CGGCCTCCACGATCCGCTCGTGCGCAAGACCAGGCTCGGGGACGCCTTCCTGGACGACCA
CCACGACGACGGCACGCCGAAGCTTGAAGCGAGCGGGACGCGGAAGGGGGACCTCGGGAA
CGACGGAGGGGTCGACGACGACCTCAGGCGAGAGGCAAATTATCTTAAATCCTGCGGCGC
AATATCAGAAACCCCTCCAGAAATTCTGAAAGCATCATATGAAGTCAAAGAGGAAGAAAT
TAATGAGTGCAATGAGACGTCCAACAACGCAGAGGAGATTAAAGGGGCCCTGGTGTCTGA
AAATAAGGATTACTTATCTGAAGGGTTCAGCTCCGACGGGCACGACGATGATGGTGCTTT
GAAGCATGACCAGGACACTGATGAAGGCACTGACGACCATGTCACCGAGGCTGATTCAGC
GCCGAGATCATCGTCGCAGGAGAGGTCTTCAGGCCAGAGCATCAGGAACCAGAAGCTCGA
CCCCAGCGATTCACCTTTCCCGACCCCATTGGCTCTCAGAGACGACATCCAGACTCCTGG
ATTCACCACACTCCAGGGGAACTTCAAGCCCGGGAAGCGCGGGAGGGCGAGCAAGCAGTT
CCTGTACCCGGTCCTGAGGCCGATCGAGAACAAGCTGCAGTGGACGGAGCTTAGAGACGA
GTCCTCCTCCTCCCCCGTGGTCGCCTCTCACCCTCCCAAGAGAAGGTACCTCTCCGCAGA
TTCCACAGAGAAGCCTCATCATCAGCCAACCCTCCCAGGCTCAGTGAACGAAAGCACAGA
GATGTCATCAGAGTCTGCGCCATTCTTGTTCCATGCCGGCAGGAAAGAGCAGCAAGCTCA
AGAGGCGACGTTTCCACAGGATGAGAATGATAACCAACAGCAGCAGCAGCAGCAGCAGCT
TGTGGGTGGCGTCGTCGGAGAGCTGCTGAACAAGAGCTCGGAGAACGGGAAGCATGGCGT
GGCTAGCCTGTCCTGCTGGCTCAAGGCCTCGTGTGCGGATGGCGGGCATGGTGAGGGCCA
GACTGGAAGGCAGCTGGGCTTCGAGGGGGTCGATCTCAGTGACGTGCCCATCTTTGTGGC
CTCTGGGCTGAACTGGGACGACGGTGAGAACCACCCGACCCCGATGCTGCCCAAGGCCTG
GGACGGCAATGGGATCCCCAACACCACCACCAAGTACAAAGAGGACCAGAGGGTTAATTG
GCACGCCACGCCGTTTGAGGAGAGGCTGATGAAAGTTTTGTCCGATGAGAAACCACACCA
CCAGAGGAAAATCAGCGGGAAGCTGATCCACCTGGAGGAGGACGCGGTGGAGAGCCCCGC
AAGCGCAACTGCTTCCTCGTGATCTGAAGCTGAGAGTGTCCACCAAGTGCTGGCCAACCT
CAAGCGGCGTGTCTGAAGCTGAACTGCTACTATCACATTCTTGTCCGCTGAAGACTTTTG
CTTGCGCGCTCCTGCATACAAACTTTCTTTGCACATCACCTGCTGATTGATGATGCTGGG
TATACGAACAATAAAGAATAAGAAAAACTCTGCTTCGCGTTCTCCCTTCTCCGCTTATGG
CTGGTCCTGCGATGCGGATGCCGTTGGGTCTCTGCCGAACAGAGCAAGGTGGTGGGTGCG
GTTTTAAATTGGGGCAATAAAAGTTTTTCACATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6398 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g07180.1	390	2e-106	protein\|expressed protein
Brachypodium v1_2	Bradi3g05100.2	454	3e-151
Arabidopsis v10	None