barSeed - Barley Seed Development Database

Probe CUST_23725_PI390587928

Source Contig U35_13001

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23725_PI390587928	Hv_44K_v2	GTGCTCCTGTAGTACAAATTTCTGCCAGACATAACTTTGGTATGAGGAATGTTTTGGATT	362	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.127	2.668	1.222	0.667	0.235	0.329
Raw	244.581	481.814	187.073	171.574	19.482	30.210

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10119.3	2096	2e-23	2024 - 2081	100	58 / 58	plus	ABC26594
MLOC	MLOC_10119.2	3066	2e-23	2397 - 2454	100	58 / 58	plus	ABC26594
Harvest21	ABC26594	462	3e-25	41 - 100	100	60 / 60	minus	ABC26594
Harvest35	U35_13001	462	3e-25	363 - 422	100	60 / 60	plus

Contig Sequence (462 bp)

>U35_13001 462 Hv_44K_v2
GCAGGAATTCGGGCACGAGGGCGGCACAATGGATCCTGCAGTTCATGAGGACGCACAAGA
TTAGGATAAATCTCAGAATTCTTGCATCCAAAAAGCTCCTGGCAGTTGCTGCTATGCTGT
GCGTGGTGTACGGTATAGCAAAGAATATGTTGTCTTGAGCTCGGCATCTCATCCTGCCGC
TGCTGCTGTGCGAGTAATTGCTCAAACCTTTAAAGTTTGCTTTGAGTAGAGGTTACATAC
GTCTATAGTAAATCATAGGAGGAAAAAACTTAAGGAAATTTCGGCAACTCTTCCAAACTT
GTTTTGTTATTTTGTGCATATCATCGAGGTCCTACTGGAAGGTGTGGTGAGTGGTTCTTC
AGGTGCTCCTGTAGTACAAATTTCTGCCAGACATAACTTTGGTATGAGGAATGTTTTGGA
TTATATTCTAAGTGAACATAACTTTCANAAAAAAAAAAAAAA

Homology of Contig U35_13001 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None