barSeed - Barley Seed Development Database

Probe CUST_23710_PI390587928

Source Contig U35_28971

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23710_PI390587928	Hv_44K_v2	CCGGAGAAAAGAAGAAAGGGAACTACTGGTCAAACGGGAGTTCTTACAGGATATGATTAG	578	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.644	1.492	1.183	0.659	0.666	0.406
Raw	124.064	155.644	120.040	91.442	36.411	25.137

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57109.2	3651	2e-24	54 - 113	100	60 / 60	plus	ABC18284 ABC24068
MLOC	MLOC_57109.1	4593	2e-24	1051 - 1110	100	60 / 60	plus	ABC18284
JLOC1	JLOC1_36965.3	3222	8e-25	119 - 178	100	60 / 60	plus
JLOC1	JLOC1_36965.2	3257	8e-25	119 - 178	100	60 / 60	plus
JLOC1	JLOC1_36965.1	3513	8e-25	119 - 178	100	60 / 60	plus
Harvest21	ABC28106	645	3e-25	579 - 638	100	60 / 60	plus
Harvest35	U35_28971	645	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (645 bp)

>U35_28971 645 Hv_44K_v2
TGCGGCAATTCGCACGGGGCCCGACATGTTCCCGGGGTAACCTCTCCCATGGTCTACATC
GGGATGCTCTTCAGTTGGTTCGCATGGCACATCGAGGACCATGAGCTCCACAGTCTCAAC
TTCCTCCACACCGGTGCACCCAAGACGTGGTATGCGGTTCCAGGGGATCGGGCCGCTGAG
CTCGAGGAAGTTATCCGTGTGCATGGCTATGGAGGCAATCCTGACCGCCTTGCGTCCCTG
GCAGTGCTTGGGGAGAAAACCACATTGATGTCCCCTGAGGTCATTGTAGCCTCTGGTCTG
CCCTGCTGTAGGTTGGTACAACATCCTGGTGAATTTGTGGTGACCTTCCCAAGGGCCTAC
CATGTTGGGTTTAGTCATGGATTTAATTGCGGAGAAGCTGCCAACTTTGCAACTCCCCAG
TGGTTGAAGTTTGCCAAAGAGGCCGCAGTTCGAAGAGCTGTGATGAATTATCTTCCAATG
CTCTCTCATCAACAGCTTCTGTATTTGCTAGCAGTTTCCTTTATATCCAGAACCCCCAGA
GAATTATTGTATGGAATTCGAACCTCTCGTTTGAGAGACCGGAGAAAAGAAGAAAGGGAA
CTACTGGTCAAACGGGAGTTCTTACAGGATATGATTAGTGAAAAT

Homology of Contig U35_28971 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67970.1	1287	3e-78	protein\|ZOS1-20 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi1g74997.1	1497	5e-119
Arabidopsis v10	AT5G04240.1	1340	1e-97	\| Symbols: ELF6 \| Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein \| chr5:1169544-1174638 FORWARD LENGTH=1340