barSeed - Barley Seed Development Database

Probe CUST_23706_PI390587928

Source Contig U35_28975

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23706_PI390587928	Hv_44K_v2	ACAAGGTCACACTCACTACATTTGTTCATGGTCTGTGCCAAAACGGGCATGTTGATCATG	554	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81731.2	3104	7e-23	1121 - 1180	98	59 / 60	plus	ABC17073
MLOC	MLOC_81731.1	3096	7e-23	1121 - 1180	98	59 / 60	plus	ABC17073
JLOC1	JLOC1_54369.1	2563	4e-23	714 - 773	98	59 / 60	plus
Harvest21	ABC28113	617	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_28975	617	3e-25	555 - 614	100	60 / 60	plus

Contig Sequence (617 bp)

>U35_28975 617 Hv_44K_v2
GCAGGAAGGGCACGAGGTTGGCCCGGGCGTGGTGCTGTCGTTTTTAGAGGGCTACGCGCG
GCTGCACATGCTCGATGATGCCTTCGACTTGGTTCTGAACCAGCTTGACATGTTCGGCAT
TCAGGGAGACGCAGTGGTGGTGGTGTACAATCACCTTCTCCGTGTTCTTATGGAGGGGAG
CAAGATCAAGCTCCTTGACTCCGTTTATACGGAGATGAGCAGTCGGGGCGTCAAGCCTGA
CCTGGTCACCTACAACACGGTGATCAACGCATTGTGTCGAGTTCATCAGGTTCGGACTGC
CGTTTTGATGCTGGAGGACATGTCTAGCAACGGCGTGCCGCCTGACGAGGTGACATTCAC
TGCGTTGATGCAAGGTTTTGTCGAGGAGGGGAGCATTGAGGCGGCACTGAGGATGAAGGC
ACGGATGTCAGAAATGGGATGTTCGCCAACGAGTGTAACAGTCAATGTTTTGATTAACGG
GTACTGCAAGCTGGGAAGAGTCGAAGATGCTCTCAGTTATGTACAGCAAGAGATTGCAGA
TGGTTTTGAACCTGACAAGGTCACACTCACTACATTTGTTCATGGTCTGTGCCAAAACGG
GCATGTTGATCATGCCC

Homology of Contig U35_28975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g40020.1	743	1e-97	protein\|PPR repeat containing protein, expressed
Brachypodium v1_2	Bradi4g14080.1	758	3e-104
Arabidopsis v10	AT3G53700.1	754	7e-59	\| Symbols: MEE40 \| Pentatricopeptide repeat (PPR) superfamily protein \| chr3:19900303-19902567 FORWARD LENGTH=754