barSeed - Barley Seed Development Database

Probe CUST_2369_PI390587928

Source Contig U35_11401

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2369_PI390587928	Hv_44K_v2	ATGTGATATCATTCCCTATCAAAAAGGCAAACAAGCCGAGGCACACCGTGACGTTGAATC	541	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57208.5	2121	2e-24	1485 - 1544	100	60 / 60	minus	ABC39520
MLOC	MLOC_57208.1	1951	2e-24	1325 - 1384	100	60 / 60	minus	ABC39520
MLOC	MLOC_57208.3	1400	2e-24	784 - 843	100	60 / 60	minus	ABC39520
JLOC1	JLOC1_37034.4	2124	8e-25	558 - 617	100	60 / 60	plus
JLOC1	JLOC1_37034.3	1494	8e-25	555 - 614	100	60 / 60	plus
JLOC1	JLOC1_37034.2	1899	8e-25	555 - 614	100	60 / 60	plus
JLOC1	JLOC1_37034.1	1362	8e-25	555 - 614	100	60 / 60	plus
Harvest21	ABC22029	620	3e-25	542 - 601	100	60 / 60	plus
Harvest35	U35_11401	620	3e-25	542 - 601	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_11401 620 Hv_44K_v2
CTCGTCTTCCCTTTCTAGCCCTGTCTCGTCTTCCTCTCCGTTGCTCGACGCGTTAATGGA
GGAATTTGTGGGGACTGGGAATTCAGCGACGCAGTAGAAACTGGCATTCCGTTGCCTTCC
AACCGAGCAGATAGGCCTATAGGCGAAAGCTCCCTTCTGTTCGTCCTCGGACAGGCGATC
CACATCTTCAGCGCGAACCAACTGACGGCCTTCTGCTGCACGGCGACTAGAGCTGCTGTG
CGAGCAACCTGTTCGACGGAATGGCTGAACGGGCCAAGCCCGGTAAAATCAAGAAAGTGG
CCGTTGCTGGCGGCAAGGACTGCTTCGAGGACCTCCCTGAACATGTGCTCGAGCTGCTGC
TGTCGTTCCTGCCCTCGCGGGACGCCGTGAGGACGTCCGTGCTCGCTCGCCGCTGGCGCG
CCCTCTGGAAGTCGGTGCCAGCACTGCGCTTCTATCCTTTTCAGTTCGAGAGCGCCAAGG
CCTTCAACAATTTTGTTTATAAGCTGCTTGAGCACCGTGACCGGACCTCACCTCTCCTTC
AATGTGATATCATTCCCTATCAAAAAGGCAAACAAGCCGAGGCACACCGTGACGTTGAAT
CGTGGGTACGGTATGCTGTC

Homology of Contig U35_11401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None