barSeed - Barley Seed Development Database

Probe CUST_23694_PI390587928

Source Contig U35_28980

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23694_PI390587928	Hv_44K_v2	ATTCAATCCCTCTTGGGTGCTTATATACAGTTACAGAGGGAGAGATAAGAGGCCACAACG	211	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.628	1.038	1.139	0.558	0.991	0.839
Raw	19.466	11.220	11.627	6.497	3.919	3.695

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77236.1	278	2e-24	115 - 174	100	60 / 60	minus	None
Harvest21	ABC28120	576	3e-25	212 - 271	100	60 / 60	plus
Harvest35	U35_28980	576	3e-25	212 - 271	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_28980 576 Hv_44K_v2
GCGGAAGAGGAACCCGCCGGAGGGGCGGCGACGGCCTGCTTGCCGCGGACGGCCGTCGAA
GGGGTGCGAGCTACGGGAAGAGGGGCGAGGGGGTTGCTGGGTGTGTTGTCGAAGTCGGCG
GAGCGACTGCGACGGAGAAGACGATTCATGGCGGAAGCGAGGATCGAAGTCTGATACTAA
GTGAAGGAATGAGCTCGTATTGCCTTAATGTATTCAATCCCTCTTGGGTGCTTATATACA
GTTACAGAGGGAGAGATAAGAGGCCACAACGGCCACGATGGGCATGGCCCTGCATGGGAA
TCGTGGCTAGTGGCATGTGATATGCATGGGTTGGTTGAGATCCAAGAGAGCCGGTCGTGC
GGTCAGCTAGGGGCCCAACGGGCATGCGACATGTTCCAACATTGCCAGCCAAAAAAAAGT
TGGTTTCAGTAATTTGGTGAAGCGGCATAAGGACCAGACGAGGCGCATTTGGGTAGCTGA
GGCAACAGCGAGCTCTACATATACTCTTTCCCATGAGATCTCAAAAAAATCGCATCTTAA
GGAAGCTGCAACACGTGCTGAGAAATGGGCTTCAAG

Homology of Contig U35_28980 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None