- Probe CUST_23693_PI390587928
- Source Contig U35_13019
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23693_PI390587928 | Hv_44K_v2 | TAGAGAAGAACCGTTGCCCGAATATAAGGGTTCTCGACTCAAACTGGGAATTAGGAGAAA | 499 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.763 | 1.666 | 1.058 | 0.815 | 0.719 | 0.718 |
| Raw | 224.507 | 279.480 | 184.749 | 189.464 | 67.678 | 75.308 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367701 | 1977 | 7e-23 | 653 - 712 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_60545.1 | 5240 | 7e-23 | 2744 - 2803 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_60545.5 | 3502 | 7e-23 | 1178 - 1237 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_60545.4 | 3634 | 7e-23 | 1263 - 1322 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_60545.3 | 3123 | 7e-23 | 1284 - 1343 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_60545.2 | 4468 | 7e-23 | 2744 - 2803 | 98 | 59 / 60 | minus | None |
| MLOC | MLOC_60545.6 | 3884 | 7e-23 | 1102 - 1161 | 98 | 59 / 60 | minus | None |
| JLOC1 | JLOC1_39488.3 | 5388 | 4e-23 | 2556 - 2615 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_39488.2 | 4555 | 4e-23 | 1723 - 1782 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_39488.1 | 3871 | 4e-23 | 1039 - 1098 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC24869 | 579 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13019 | 579 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus |
Contig Sequence (579 bp)
>U35_13019 579 Hv_44K_v2 GGGATGGTGAGAAATTTGATGATGCCCTTTCTCGTGTGCGTCGCTGTGTCGGTGGGGGGG CTGAGGCAGATAATGCAGACAGTGATAGTGATATTGAAGTTGTTGCTGATTCAGTCTCTG TAAATCTCCGATGTCCTATGACTGGTTCAACGATTAAGGTAGCTGGTAGGTTCAAACCCT GTGTCCACATGGGTTGTTTTGATTTAGAAGCTTTTGTGGAACTGAATCAACGTTCACGGA AGTGGCAATGCCCAATTTGCCTGAAGAACTATTCTCTGGAGAATCTAATTATTGATCCTT ATTTCAATCGCATCACTTCGATGATCAAAAGCTGTGGAGATGATATATCTGAAATCGATG TCAAGCCTGATGGTTCCTGGAGAGCCAAGGGTGGAGCTGAACCGAATGATCTTATGCAGT GGCATTTACCAGATGGCACTCTCTGTATCTCCATAGGTACAGGACCGAAACCCAACACGG GTGTTGTAAAGCCAGAGATTAGAGAAGAACCGTTGCCCGAATATAAGGGTTCTCGACTCA AACTGGGAATTAGGAGAAACAGCAATGGCGAATGGGAAA
Homology of Contig U35_13019 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g50980.1 | 814 | 6e-111 | protein|ATSIZ1/SIZ1, putative, expressed |
| Brachypodium v1_2 | Bradi4g45080.1 | 793 | 1e-109 | |
| Arabidopsis v10 | AT5G60410.2 | 885 | 1e-77 | | Symbols: ATSIZ1, SIZ1 | DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain | chr5:24295226-24300792 FORWARD LENGTH=885 |