- Probe CUST_23683_PI390587928
- Source Contig U35_15677
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23683_PI390587928 | Hv_44K_v2 | AAATTAGCACTAGCTGTGATTACTAGTTAGGCGTTTGCTGCAACAACCACGGCCTGAAAC | 351 | GeneList: darkturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.572 | 0.659 | 1.400 | 2.108 | 1.105 | 1.068 |
| Raw | 592.432 | 1105.298 | 2027.000 | 4521.523 | 874.505 | 936.112 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_76020.1 | 433 | 2e-24 | 322 - 381 | 100 | 60 / 60 | minus | ABC03515 |
| JLOC1 | JLOC1_50710.1 | 421 | 8e-25 | 309 - 368 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC03515 | 505 | 3e-25 | 352 - 411 | 100 | 60 / 60 | plus | ABC03515 |
| Harvest35 | U35_15677 | 505 | 3e-25 | 352 - 411 | 100 | 60 / 60 | plus |
Contig Sequence (505 bp)
>U35_15677 505 Hv_44K_v2 ATCAATTCAGTGAGATAGTTCAAGAAAACCAGCTCTGTTCTTTCAGTAGCGCAACTTCGC AAGTCCACTAGAACAAGGGGAAGAGATGGCTTCTCCGGCCAAGGCATCGTGGATGGTGGC GATGAGTGTCGGCGCCGTGGAGGCGCTCAAGGATCAGGCCGGCCTCTGCCGCTGGAACTA TGCTCTCAAGTCCATCCACCGGGCAGCCAAGGCCAGGGCCAACGTCCGTGGCGGCGTCTC ACAGGGTGCCAAGCAGCTTCCGGCCTCTGCTGCGGCGGTGGCGGAGAAGCGGCGAGCGGA GAAGGCCGAGGAGGGGCTGAGGACGGTGATATACCTCAGCTGCTGGGGTCCAAATTAGCA CTAGCTGTGATTACTAGTTAGGCGTTTGCTGCAACAACCACGGCCTGAAACCGGTTGGCT TCCCCGTGGAATCTTCCGTTGTAAAAAAACACGATGATGATGATGAAAAATTTCTTTTAC TTCAGTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_15677 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |