barSeed - Barley Seed Development Database

Probe CUST_23678_PI390587928

Source Contig U35_41942

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23678_PI390587928	Hv_44K_v2	CCAGGCCAAAGAAATGCTCCACAAAAATTGCACCTCCTGACAAGAAAATAATAGAGGGGC	309	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61578.5	3902	2e-24	2231 - 2290	100	60 / 60	minus	ABC37269
MLOC	MLOC_61578.8	3474	2e-24	2090 - 2149	100	60 / 60	minus	ABC37269
MLOC	MLOC_61578.6	3760	2e-24	2090 - 2149	100	60 / 60	minus	ABC37269
MLOC	MLOC_61578.7	3647	2e-24	2088 - 2147	100	60 / 60	minus	ABC37269
MLOC	MLOC_61578.2	4188	2e-24	2342 - 2401	100	60 / 60	minus	ABC37269
MLOC	MLOC_61578.3	3827	2e-24	2336 - 2395	100	60 / 60	minus	ABC37269
MLOC	MLOC_61578.4	3695	2e-24	2336 - 2395	100	60 / 60	minus	ABC37269
MLOC	MLOC_61576.1	7202	2e-24	1881 - 1940	100	60 / 60	minus	ABC17285 ABC37269
MLOC	MLOC_61578.1	8279	2e-24	3246 - 3305	100	60 / 60	minus	ABC17285 ABC37269
JLOC1	JLOC1_40239.5	3773	8e-25	1414 - 1473	100	60 / 60	plus
JLOC1	JLOC1_40239.4	3550	8e-25	1191 - 1250	100	60 / 60	plus
JLOC1	JLOC1_40239.3	3781	8e-25	1422 - 1481	100	60 / 60	plus
JLOC1	JLOC1_40239.2	3804	8e-25	1445 - 1504	100	60 / 60	plus
JLOC1	JLOC1_40239.1	3034	8e-25	675 - 734	100	60 / 60	plus
Harvest21	ABC37268	431	3e-25	310 - 369	100	60 / 60	plus
Harvest35	U35_41942	431	3e-25	310 - 369	100	60 / 60	plus

Contig Sequence (431 bp)

>U35_41942 431 Hv_44K_v2
GACAGGAGCCTGGTGAGCTATCTCAAGCAAATGCTTTGGACGTTGTGGAGGGGTTGATCT
CAATTCATGGCGGCATATCGTCTCAAGAACCATCACCAAAAAAATTAGAAAAAGCAAAGC
CACCTGTTTCAGTTAAGATGGGAACTTTACTATTGGCTGAGAAGGTTGACCGGCGTATAA
GTTCCAGTGGAAAAGCAGAAGTCTTTGCATGGGTGGATAGTCGCGAGGATGATGGCGGAG
GTGATTTTTTCAGGAAAAACAAGGATATCTTGTTGCACCAATCAGCTGGCAGAGGGAAAT
CAAAAATTCCCAGGCCAAAGAAATGCTCCACAAAAATTGCACCTCCTGACAAGAAAATAA
TAGAGGGGCGCANAAGGAGAACGAGGTCCAAACTTTGTGAGAAGACTGAAACTTTACCTT
CATCGGATTCG

Homology of Contig U35_41942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g36210.1	1233	8e-64
Arabidopsis v10	None