barSeed - Barley Seed Development Database

Probe CUST_23677_PI390587928

Source Contig U35_41943

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23677_PI390587928	Hv_44K_v2	GCCCATCCTCAAGTTCTAGCTCTGTCGTGTGATTAAAATCTGTAATTTGTAGGGTGTTAA	15	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61578.2	4188	2e-23	81 - 138	100	58 / 58	minus	ABC37269
MLOC	MLOC_61578.3	3827	2e-23	75 - 132	100	58 / 58	minus	ABC37269
MLOC	MLOC_61578.4	3695	2e-23	75 - 132	100	58 / 58	minus	ABC37269
MLOC	MLOC_61578.1	8279	2e-23	91 - 148	100	58 / 58	minus	ABC17285 ABC37269
JLOC1	JLOC1_40239.5	3773	1e-23	3594 - 3651	100	58 / 58	plus
JLOC1	JLOC1_40239.4	3550	1e-23	3371 - 3428	100	58 / 58	plus
JLOC1	JLOC1_40239.3	3781	1e-23	3602 - 3659	100	58 / 58	plus
JLOC1	JLOC1_40239.2	3804	1e-23	3625 - 3682	100	58 / 58	plus
JLOC1	JLOC1_40239.1	3034	1e-23	2855 - 2912	100	58 / 58	plus
Harvest21	ABC37269	600	3e-25	16 - 75	100	60 / 60	minus	ABC37269
Harvest35	U35_41943	600	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (600 bp)

>U35_41943 600 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACACCCTACAAATTACAGATTTTAATCACACGACAGAGCTAG
AACTTGAGGATGGGCATAAAACAGGCATCGGCCACAGCACACCATACATTTACACTGGTA
TGGTATCAACTCTTTGATACGGGCACAAACCGCCCGTGGGCGCCGTCTTTCAGCCACCTC
GTCGAGCGGGTCTGCTTCACACGGTCCAAGAAAAGGCGGTGCCTCTCGTAATCGAGCTTC
TGGGTGACTATACCGTTCAGCAGAAGCTCCACATCGAAAACATCAATGCCTTTCTCAACG
AGGGGAGCGCATGTTTGATAGTCCTCTTCACATGAGATGACAAGTGGGTCATCTGCTGCT
TCCTTTTCCTTCCTTATGGACCTACCCATCCTCTCCAATGGCTGCCCAGAAGATGCGGAA
ACCAAGCTAGTCACCACCTCTCGACTTGGCTTCACATTTTGTGTCACAAACACTCTTTTC
CCCAACAGCAGAGGACTCTTGCAAGCTGAGGCCAGTGATATAGGCATGCTGAAACCCATC
TCCTTTTCCTTTTTGGCATCCCTCAGAATATACTTCTTATCGTTTACAAAACAGCCTGCT

Homology of Contig U35_41943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05440.1	1465	3e-72	protein\|expressed protein
Brachypodium v1_2	Bradi2g36210.1	1233	1e-79
Arabidopsis v10	None