barSeed - Barley Seed Development Database

Probe CUST_23672_PI390587928

Source Contig U35_27653

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23672_PI390587928	Hv_44K_v2	ACTTATGCCCATGGGAGAGATTACCAATGTTGTGAAAGAATTGCTGTTATGTGGCTACCA	481	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75294.3	1989	2e-24	434 - 493	100	60 / 60	plus	ABC44342
MLOC	MLOC_75294.1	3872	2e-24	2315 - 2374	100	60 / 60	plus	ABC44342
MLOC	MLOC_75294.2	3969	2e-24	2305 - 2364	100	60 / 60	plus	ABC44342
JLOC1	JLOC1_50223.2	3868	8e-25	2245 - 2304	100	60 / 60	plus
JLOC1	JLOC1_50223.1	3927	8e-25	2304 - 2363	100	60 / 60	plus
Harvest21	ABC21715	582	3e-25	482 - 541	100	60 / 60	plus
Harvest35	U35_27653	584	3e-25	482 - 541	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_27653 584 Hv_44K_v2
AATATGCTGCAAGGCTTGGTCAGTCCTTTAGTGCCTCGACAGAAACCTTGAAAGTACATA
AGTATGAGGTGCAAGCACTTCCAGAAGTAACAAACGGTACGAAGTATGTATTCTCTGATG
GGATTGGAACCATTTCAGCTGATTTTGCAGATGAGGTGTCTAGGAAGTGCAAATTGGCCC
GCTTTACTCCCTCTGCTTTCCAAATAAGGTATGGAGGTTATAAAGGTGTTGTCGCTATTG
ATCCAAGATCACACTGGAAACTTTCTTTAAGAAGTAGCATGTCAAAGTTTCCATCAGAAA
ACATCACACTGGATGTCCTTGCATACAGCAAGTACCAGCCATGTTTCCTCAATCGGCAGT
TAATCACCCTTCTTTCAACACTTGGAGTCAGAGATAACATATTTGAACTGAAGCAACAAG
CAGCTGTGATGCAGTTAAACAGATTGGTAACTGAACCACAAGCTGCTATTGATGCAATTG
AACTTATGCCCATGGGAGAGATTACCAATGTTGTGAAAGAATTGCTGTTATGTGGCTACC
AGCCGGATGTTGAACCATATCTTTCTATGATCCTACAAACCTTT

Homology of Contig U35_27653 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50330.1	741	2e-99	protein\|RNA-dependent RNA polymerase, putative, expressed
Brachypodium v1_2	Bradi3g59910.1	987	8e-79
Arabidopsis v10	AT1G14790.1	1107	4e-78	\| Symbols: RDR1, ATRDRP1 \| RNA-dependent RNA polymerase 1 \| chr1:5094317-5097817 REVERSE LENGTH=1107