barSeed - Barley Seed Development Database

Probe CUST_2366_PI390587928

Source Contig U35_11406

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2366_PI390587928	Hv_44K_v2	TTTGTGGTTGATCGGCTGAAAGAGATAATTAAGTACAATGGCTACCAGGTTGCTCCTGCG	824	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.482	1.236	2.371	2.739	0.703	0.751
Raw	4.395	22.453	37.935	69.004	5.791	6.431

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373752	1707	2e-24	1259 - 1318	100	60 / 60	plus	None
MLOC	MLOC_59783.2	1228	6e-24	658 - 716	100	59 / 59	plus	None
JLOC1	JLOC1_38920.1	1253	3e-24	663 - 721	100	59 / 59	plus
Harvest21	ABC22756	899	3e-25	825 - 884	100	60 / 60	plus
Harvest35	U35_11406	899	3e-25	825 - 884	100	60 / 60	plus

Contig Sequence (899 bp)

>U35_11406 899 Hv_44K_v2
GCAGCGCCGTCCTCCTCGACTCCCCGAGTTTCTCCTCGTTCTTGCACGGGCCCGGCGATG
CCTCGGTCATGGACGCCGCTGTGATTTACCAATCGGAACCGGCGGCGATACTCTACTCCT
CCGGCACCACCGGGAGCGCCAAAGCGGTGGTGCTCACGCACCGCAACCTCATGACGACAC
GCGCCATGCCTGGTCCGGCGCCGCCGGACGAGGTTGTGATGCTGACCGTGCCGCTCTTCC
ATGTCTACGGATTCGTGTTCTGCCTCAGGCCTGTAATGGCGGCGCAAACACTTGTGTTGC
ACACGGCGAGGAGATTTGACACCAGGGGGGTGCTGGTAGCGGTGGGGAGGTTCCGGGTGA
CGCGGCTGGCCCTTGCGCCGCCGTCGCTGTTGGCGATTGTGCGAACAGCTGAGGACGACG
AGAGTGTGACTGCCAGCGCTGCAACGCTGCAGGTGGTGCTCTGCGGCGGCGCAGCCCTCT
CACCGGGGCTTATCCGGCGATTCTCCCATAAATTTCCGCACATCTGTGTTTTACAGGGAT
ATGGACTGACCGAGACTACAGCTGGTTTTTGCCGTTCCATTGGAGTAGAAGAAAGTCGAC
GAATCGGGTCAGTTGGGCGTCTTTCGCCGGGTGCTGAGGCGAAGATTATTGATCCTGGAA
CAGGGGATGCTCTGCCTCCCGGTGTGCTAGGCGAGCTCTGGGTCCGAGGACCTTTTGTAA
TGGAAGGTTATCGTGGTGACAAGGAATCCACCTCCGAGATTTTGGATTCTGAAGGGTGGT
TGAGAACCGGGGATGTTTGTCTTATCGACAAAGATGGATTCCTCTTTGTGGTTGATCGGC
TGAAAGAGATAATTAAGTACAATGGCTACCAGGTTGCTCCTGCGGAACTGGAGGACCTG

Homology of Contig U35_11406 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67540.1	599	9e-77	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi4g19947.1	545	2e-164
Arabidopsis v10	AT5G63380.1	562	1e-84	AMP-dependent synthetase and ligase family protein \| chr5:25387581-25390026 REVERSE LENGTH=562