barSeed - Barley Seed Development Database

Probe CUST_23652_PI390587928

Source Contig U35_15681

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23652_PI390587928	Hv_44K_v2	GCATGTTGATGTGGTCATGTGGAACCTTGGATAATAAAGTTGGAGGAGGATATTACTGTC	437	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.013	0.026	0.414	2.033	4.040	7.215
Raw	216.995	898.039	13797.833	97032.900	72273.433	142072.666

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58459.1	885	2e-24	657 - 716	100	60 / 60	plus	ABC03497 ABC44405
MLOC	MLOC_58456.1	502	2e-23	443 - 500	100	58 / 58	plus	ABC03497 ABC44405
JLOC1	JLOC1_37983.1	542	8e-25	455 - 514	100	60 / 60	plus
Harvest21	ABC03497	547	3e-25	438 - 497	100	60 / 60	plus	ABC03497
Harvest35	U35_15681	547	3e-25	438 - 497	100	60 / 60	plus

Contig Sequence (547 bp)

>U35_15681 547 Hv_44K_v2
GCACGAGGGAAAAGCATCTCTCCAGGAGTAGGAAAGAACTATCTTCAGTTTTTGGCACTG
ATTTGTGCTCGCTAGCAAAACAAGAACCGATCGAGACCATGGCGATGGGTCACCTCCGTG
GCTTTCTGGTTTTCATCCTGGTGCAGGTCTGCCTGCTCTTGATGATGGCCGCGTCGGCCA
AGGTGCAGGGCAGGACTGTGGCCGGAGTTCCCGCGTGCTGCTCCTACCGCCCCGAGTGCT
GCGAGCGCCTGACGGCGGAAGCCCCGCTCGCCGCCGCCGTTATTCCGTGATGGCGCCGCC
TGCGGGGGTCGCTCTCCTCCCTAGAAATGTGTCCGTGACGTGAGCATACATTCTACTGGA
TCTGCAGTATGCATACATCGATATGATTCCGCTGCTTTTTCATGTCTCTATATATGTTTC
AGAACTTTTGATTCCATGCATGTTGATGTGGTCATGTGGAACCTTGGATAATAAAGTTGG
AGGAGGATATTACTGTCAAAAAAAAAAAAAAAAAANAAAAANAAAAAAAANAAAAAAAAA
AAAAAAA

Homology of Contig U35_15681 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None