barSeed - Barley Seed Development Database

Probe CUST_23649_PI390587928

Source Contig U35_15684

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23649_PI390587928	Hv_44K_v2	CAGGAAGCTGCTGCATCATGGTCGGCCCACTTTAATATGCAATTGCTTGGGTTTAAAAAA	2029	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.891	1.642	1.153	0.725	0.310	0.334
Raw	2739.603	3609.427	2269.390	2212.767	334.260	392.125

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC31832	232	3e-25	12 - 71	100	60 / 60	minus	ABC31832
Harvest35	U35_15684	2100	3e-25	2030 - 2089	100	60 / 60	plus

Contig Sequence (2100 bp)

>U35_15684 2100 Hv_44K_v2
AAGATCTCGTCCCACCGAAACCTAGCACCCCATTCTCTCCTCTCGAACTCTCCAGTCCCA
CTGCCCCTTCCCCACCCCCGCCGCCGCCATGGCGATCACCGCCCAGGTCCCCGACATCAT
GGGCGAGCGCCAGTCCGGCCAGGACGTCCGCACCCAGAACGTATCGGCGTGCCAGGCGGT
GGCCAACATCGTCAAGTCCTCGCTCGGCCCCGTCGGGCTCGACAAGATGCTCGTGGATGA
CATTGGCGATGTCACGATCACGAATGACGGAGCCACCATTCTGAGGATGCTGGAGGTCGA
GCATCCCGCGGCAAAGGTTCTCGTGGAATTGGCTGAGCTCCAAGACCGGGAGGTTGGAGA
TGGAACTACCTCTGTTGTTATCATCGCTGCAGAGTTGCTCAAGAGAGCCAATGATCTTGT
GAGGAATAAGATTCACCCGACCTCTATTATTAGTGGCTACAGGCTTGCTATGCGTGAAGC
ATGCAAGTATGTGGAGGAAAAGCTGTCTGTCAAGGTGGAAAAACTTGGAAAAGACTCCCT
TATAAACTGTGCAAAAACTAGCATGTCCTCGAAACTGATTACAACGGATGATAATTTCTT
TGCAAATCTGGTTGTAGAAGCAGTTCAAGCTGTGAAGACCACAAACTCCAAGGGAGAAGT
GAAGTATCCAATCAAGAGTATTAATATTTTGAAAGCTCATGGTAAAAGTGCCAAGGAAAG
TTACCTGCTGAATGGTTATGCGCTGAACACTGGCCGTGCTGCTCAAGGAATGCCTACCAG
AGTAACCCCTGCTAGAATTGCTTGTCTTGATTTCAACCTTCAGAAGACGAAAATGCAAAT
GGGTGTTCAAGTCCTTGTATCTGATCCAAGGGAACTGGAGAAGATCCGTGAGAGGGAATC
TGACATAACAAAGGAGCGAATTGAGAAAGTTCTCAAGGCTGGTGCTAATGTTGTATTTAC
CACCAAGGGAATTGATGATATGTCATTGAAGTACTTTGTTGAGGCTGGAGCAATTGCAGT
AAGACGTGTGCGTAAGGAGGATTTGCGCCATGTTGCCAAGGCAACAGGTGCGACAATGGT
GACTACTTTTGCTGACATGGAGGGTGAAGAAACATTTGATCCTTCCTTTCTTGGACATGC
CGACGAGGTCGTTGAGGAAAGGATTTCTGATGATGAAATAATTCTAGTGAAAGGCACAAA
GAACACAAGTGCGGTTTCCATTATACTCAGAGGAGCAAATGACTTCATGCTAGACGAGAT
TGAACGGTCTTTGCACGATGCACTGTGCATTGTGAAGAGAACTTTGGAATCCAATACGGT
AGTTGCTGGTGGTGGTGCTGTAGAAGCTGCATTATCTGTGTACCTGGAGAATCTTGCTAC
AACCCTTGGATCCAGGGAGCAACTGGCGATTGCTGAATTTGCAGAGTCTTTGTTGATCAT
ACCAAAGGTCCTTGCTGTTAATGCCGCAAAAGATGCAACTGAGCTTGTTGCAAAGCTTAG
GTCATATCATCATAAAGCTCAAACAAATGCTGATAAGCAGCACTTATCAAGCATGGGTCT
TGATCTGACAAAAGGTGTAATCCGCAACAACCTTGAGCATGGTGTGATCGAGCCAGCAAT
GAGCAAAGTGAAGATCATTCAGTTTGCCACAGAAGCAGCCATTACCATTGTGAGGATTGA
TGACATGATCAAGCTTGACAAGGAAGAGTCTGGCCAAGAAGAGTAGCCACATGCCATTTT
ACGATCCCTGGTTGCTGTTTGTTATGCCATGGCTGGTGCTATAGACTCGTAGATTGCTGC
TTGTGATTTTCCTTTTCTTCCTCTTTGTATTAGCGGACGTTGTCGTAGAATGTTGTATGG
AAGATGGATGTGCGAGAGTGTATCGTTGTGTGTGGGTAGTAGAAGGACTCGTGAATGGAA
GCAAATTTTGCCTGCAGCTTTATTACGGCATCGCTGATAGTTCATGCAACTAACATTTTT
GCCATGTATGTCTTGATCAAAAAAAAAAAATCCACTGTTACCACTGCCTCAGGAAGCTGC
TGCATCATGGTCGGCCCACTTTAATATGCAATTGCTTGGGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15684 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g46620.1	546	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi5g17750.1	546
Arabidopsis v10	AT3G20050.1	545	\| Symbols: ATTCP-1, TCP-1 \| T-complex protein 1 alpha subunit \| chr3:6998544-7002266 REVERSE LENGTH=545