barSeed - Barley Seed Development Database

Probe CUST_23640_PI390587928

Source Contig U35_27660

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23640_PI390587928	Hv_44K_v2	CTGCTACGATCATGCGAATAAAAAGGAAGAATGACTGTAGCTTGTGTTTGTGATGCTAAA	642	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38924.1	376	3e-22	241 - 300	98	59 / 60	plus	ABC22231 ABC31966
JLOC1	JLOC1_25349.1	462	1e-22	323 - 382	98	59 / 60	plus
Harvest21	ABC22231	716	3e-25	15 - 74	100	60 / 60	minus	ABC22231
Harvest35	U35_27660	716	3e-25	643 - 702	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_27660 716 Hv_44K_v2
GGTTTGAGAAATTCAGCGGAATTTTCAGAAAACATGTGCACACATGTGCAGTCACTGGTA
AAGGCATTTCTGAGCTGGAGAGCGCTGTAATAGAGGTCAGAGGTCTTGAGTCCGTGCCTT
CCGGGGGACGACGGTGGACTGTAAACCAGAGACAACTGGAACAGCTCATGAGGACCCAGG
AAGCTTTCACAAGACTAGAGTCGTCGATCAATGAGCAGCTGCCCTTGGATTTTTGGACTA
TTGACTTGAGGGACGCTGCATTGGCTCTGGCAACAATTAGTGGAGAGGACATATCTGAAG
AAGTTTTGAGCAACATATTCAGCAAATTCTGCATTGGAAAATGATTCGTCCTTCAGAATC
ATGTTGGGTCCTCGGTCATTTCCGACACTTTTGACTTTTGAGCAGCATATGCAGTGGCAT
AGAACGATCTGAACAAGCCTGGTAGCTATCCAAAGAATGAGCAATGAAATTGAACCCATT
TTCTGGATGGGGTCAAAGATCTATAGGCTGGGATTGCTGTTGTCACTGTCCTATAGATTT
GACAATATCCCGAATTTGTTAGCTAGATCTGGGATGTGTTTGGGTCCAGTTTAACTTGGT
AATAGGAAACCGTATTTGCACAAATCCGAAGAATGCAAGTACCTGCTACGATCATGCGAA
TAAAAAGGAAGAATGACTGTAGCTTGTGTTTGTGATGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_27660 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31460.1	571	5e-60	protein\|GTPase of unknown function domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g35517.1	544	1e-63
Arabidopsis v10	None