barSeed - Barley Seed Development Database

Probe CUST_2363_PI390587928

Source Contig U35_11412

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2363_PI390587928	Hv_44K_v2	AAGGTCCCCTGGCCAGTTTCAGAGAGAGAAGCTCTTCTACACTACTTTCAGTTTGAGTAT	606	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19267.3	2262	2e-24	1561 - 1620	100	60 / 60	minus	ABC37864
MLOC	MLOC_19267.5	1575	2e-24	1425 - 1484	100	60 / 60	minus	ABC37864
MLOC	MLOC_19267.1	2215	2e-24	1466 - 1525	100	60 / 60	minus	ABC37864
MLOC	MLOC_19267.2	2211	2e-24	1466 - 1525	100	60 / 60	minus	ABC37864
JLOC1	JLOC1_13364.6	1962	8e-25	432 - 491	100	60 / 60	plus
JLOC1	JLOC1_13364.5	1992	8e-25	432 - 491	100	60 / 60	plus
JLOC1	JLOC1_13364.4	1914	8e-25	354 - 413	100	60 / 60	plus
JLOC1	JLOC1_13364.3	1758	8e-25	228 - 287	100	60 / 60	plus
JLOC1	JLOC1_13364.2	1792	8e-25	224 - 283	100	60 / 60	plus
JLOC1	JLOC1_13364.1	1722	8e-25	154 - 213	100	60 / 60	plus
Harvest21	ABC36488	526	3e-25	466 - 525	100	60 / 60	plus
Harvest35	U35_11412	667	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_11412 667 Hv_44K_v2
CTGCCTCCCTCCCCCCTCTCCTTCCACCCCTCTTCCTCGTCGTCATCGATCACCACCAGC
TCCAGCTCCAGCTCCAGCTCTCCGCACACGGTGGTGCCCATGGAGACGAGGAAGGGAATC
CTGGAGCTGCGCGACCGCCTGGACAAGACCCTGGCGTGCCCTGATCTCGCCGACGAGGGC
TCTCTGAGATCTCTGGTGAAGAAGCAGATTCTGGAGTCGTCTCTTCCTGGCTCTGACCAA
GGCAACATCGACGTGATTGCTGAAGCACGGGCCAAAGAAGTCTCCAATTTTCTTGAAATG
CTAGACACTTCAGTAAATGAACGGCCTTCAGAGATTCGTGGGCCACAACAGAAGGAATGG
AAGGTGAAGCAGGATACAGACCAATTACGAGTCATGTACCGCGAAGGTCCAGATGGGACC
CCATTTCATACTCTTCTTGCTGAAGGCTTTGCTGATGGTCCTATCGATGTTTGTACATGT
GTGTCGTGGGAATCAGGTCTATACAAAAAATGGTTTCCGCAGTACAATCTGCCAACATTT
AAAATTGCTCAGTCAGGCTGCTTGAAAAAGATTCGGGTTGGCGAAGAAATTTCTTTGATC
AGGGTGAAGGTCCCCTGGCCAGTTTCAGAGAGAGAAGCTCTTCTACACTACTTTCAGTTT
GAGTATC

Homology of Contig U35_11412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g36070.2	550	1e-106	protein\|expressed protein
Brachypodium v1_2	Bradi4g16140.1	533	6e-117
Arabidopsis v10	AT5G06440.4	486	3e-51	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3). \| chr5:1964641-1966807 REVERSE LENGTH=486