barSeed - Barley Seed Development Database

Probe CUST_23636_PI390587928

Source Contig U35_41957

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23636_PI390587928	Hv_44K_v2	ATTCATGTGTCGCTGTTATGGAGGGAAAGAATGCAAAGGTGATTGAGAATTCGGAAGGCG	292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359780	2337	2e-24	239 - 298	100	60 / 60	plus	ABC06096 ABC22700
MLOC	MLOC_61727.1	2549	2e-24	394 - 453	100	60 / 60	plus	ABC06096 ABC22700
JLOC1	JLOC1_40353.1	2493	8e-25	325 - 384	100	60 / 60	plus
Harvest21	ABC37298	519	3e-25	293 - 352	100	60 / 60	plus
Harvest35	U35_41957	519	3e-25	293 - 352	100	60 / 60	plus

Contig Sequence (519 bp)

>U35_41957 519 Hv_44K_v2
GCACCATTCCAGACTCTAGTGCGAGAGCAGAGCACAAAAGCTGCTCCCAATTCCCAAACC
CTCCGCACACTGAATCGCCCAAAAACCTAGACCTCTCCGCCCCCGGCCATGCTCCTCCGC
GCCGTGCGCCGCCGAGGCATCGCCTCGCCGCTCGCCACCGCCACCCTGACTGCCAACGTC
CAATCAACATGTGCTGCTGCAAATGTGTGCTCCAGATGGGCTACTTTTGCAAGAACTTTC
AGCGCAAAGCCAACTGGAAATGAGGTTATTGGAATTGATTTGGGAACGACCAATTCATGT
GTCGCTGTTATGGAGGGAAAGAATGCAAAGGTGATTGAGAATTCGGAAGGCGCCAGGACT
ACACCGTCAGTTGTTGCCTTTTCTCAGAAAGGAGAGCTACTCGTGGGCACTCCAGCCAAG
CGTCAAGCAGTGACCAACCCACAGAACACCTTCTTTGGCACAAAGCGTATGATTGGGCGG
CGCTTCGATGACCCACAGACACAGAAGGAGATGAACATG

Homology of Contig U35_41957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02260.1	677	2e-72	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi1g77637.1	688	4e-72
Arabidopsis v10	AT5G09590.1	682	2e-53	\| Symbols: MTHSC70-2, HSC70-5 \| mitochondrial HSO70 2 \| chr5:2975721-2978508 FORWARD LENGTH=682