- Probe CUST_23634_PI390587928
- Source Contig U35_41958
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_23634_PI390587928 | Hv_44K_v2 | ATCAGTCCATGGAATCAATGGAGCCGGAGGTGGTTGCGGGGATGAAGCAGAAGAAGTGCT | 1 | GeneList: black MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.618 | 1.091 | 0.827 | 0.976 | 2.317 | 3.391 |
Raw | 2.987 | 10.450 | 9.235 | 13.966 | 14.163 | 23.098 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_66580.1 | 1556 | 2e-24 | 36 - 95 | 100 | 60 / 60 | plus | ABC24555 |
JLOC1 | JLOC1_43890.1 | 1276 | 8e-25 | 18 - 77 | 100 | 60 / 60 | plus | |
Harvest35 | U35_41958 | 421 | 3e-25 | 2 - 61 | 100 | 60 / 60 | plus |
Contig Sequence (421 bp)
>U35_41958 421 Hv_44K_v2 CATCAGTCCATGGAATCAATGGAGCCGGAGGTGGTTGCGGGGATGAAGCAGAAGAAGTGC TGCCCGCTCCGGCGGTCGCGCAAGGGCTGCATGAAGGGCAAGGGCGGCCCCGACAACCAG CAGTGCCCCTTCCGCGGCGTCCGCCAGCGCACCTGGGGCAAGTGGGTCGCCGAGATCCGC GAGCCCAACCGCGGCGCCCGCCTCTGGCTCGGCACCTTCGCCACCGCGCTCGACGCCGCG CGCGCCTACGACGCCGCCGCCAGGGCGCTCTACGGCGACTGCGCCCGCCTCAACCTCTCA GCGTCGCCGTCCCAGGTGCAGGTGCAGGTGCAGGTGCAGCTCCCGCCAGCTCAAGGCAGT GGAGCCAACGGTAACTCGCCGCCGGGGACGCCGTGTTGCTCCTCCAACAACTCCAACTCC A
Homology of Contig U35_41958 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |