barSeed - Barley Seed Development Database

Probe CUST_23632_PI390587928

Source Contig U35_27666

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23632_PI390587928	Hv_44K_v2	TTGGTAGGAAAGATAAGCTCGTGAGGTGATTTTTGTGCCATGTTCAGGCCATCAAACAAG	545	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.412	1.488	1.159	0.900	0.393	0.463
Raw	3942.050	6505.427	4458.743	5448.943	839.522	1063.665

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249235.1	1328	7e-23	1237 - 1297	98	60 / 61	plus	ABC24845
MLOC	MLOC_81901.2	1043	7e-23	36 - 96	98	60 / 61	minus	ABC24845
MLOC	MLOC_81901.1	981	7e-23	62 - 122	98	60 / 61	minus	ABC24845
JLOC1	JLOC1_54472.1	1045	4e-23	863 - 923	98	60 / 61	plus
Harvest21	ABC24845	637	3e-25	33 - 92	100	60 / 60	minus	ABC24845
Harvest35	U35_27666	637	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_27666 637 Hv_44K_v2
TTTACCAAAGCAAACAGAGTCTGTTGAAGAACCAAATACTGGCTCTGAGGAGAATGTTGA
ACCTGCCACAAGCTCTAAAGTGGCACGGGGGCAAACACTCCCTGGCTCTAAGATCAAAGA
TTTGCCAGGAGGTCTCATGGGGAAGATACTCGTTTATAAGAGTGGTAAAGTGAAGATGAA
GATAGGAGATGCACTGTTTGATGTATCTCCCGGTTCAAATTGCATGTTTGTCCAGGAGGC
TGTGGCGGTTAACACAAGAGAAAATCATTGCTGCGCCCTTGGAGAGGTCAGTAAGCGCGC
AGTTGTTACCCCCGACGTTGCCCATCTGCTTGGTTCTACTGACAAGATGGAAGAATAAGC
CCTTGTTTGCATGGGGAATTCTTCAGGAGAACAACCTCTGAGTATACTTGCCCTTCCCGG
ACTTCATTCTAGGAGGGAGGTATCAGCTTTTTCTGTCTCAATATGACAGTCTTTGGTTGG
AAATGCACTGAACAAAGTTGAATTGATCAGTCAGTGAAAAATAGACCAGTGCTGAAGTCG
CAGTTTTGGTAGGAAAGATAAGCTCGTGAGGTGATTTTTGTGCCATGTTCAGGCCATCAA
ACAAGTTTNTNTGAAGTGAAGGTGGTTAAATTGCAAA

Homology of Contig U35_27666 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g34200.1	310	3e-55
Arabidopsis v10	None