barSeed - Barley Seed Development Database

Probe CUST_235_PI390587928

Source Contig U35_32057

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_235_PI390587928	Hv_44K_v2	GCGGGCAACACCGGTACGCCAACTCGTGGCCGGTGGAGGTGGCTGTGCTGTCGCAGCGCT	395	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356422	2184	2e-24	1146 - 1205	100	60 / 60	plus	ABC22198
MLOC	AK359487	2171	2e-24	1089 - 1148	100	60 / 60	plus	ABC22198
MLOC	MLOC_66355.4	2302	2e-24	824 - 883	100	60 / 60	minus	ABC22198
MLOC	MLOC_66355.1	1808	7e-23	1056 - 1115	98	59 / 60	minus	ABC22198
MLOC	MLOC_66355.3	2550	7e-23	1005 - 1064	98	59 / 60	minus	ABC22198
JLOC1	JLOC1_43713.1	2505	4e-23	1056 - 1115	98	59 / 60	minus
Harvest35	U35_32057	455	3e-25	396 - 455	100	60 / 60	plus

Contig Sequence (455 bp)

>U35_32057 455 Hv_44K_v2
CGACAGCGCCTCCGCCCTCCAGATCGCCGGCGCGCTCCGGGCCATGGCCGAGTCGCGGGG
CCGCACCGTGGTGCTCAGCATCCACCAGCCCGGCGCGCGCAACGTCAAGATGTTCGACGC
CGTGCTCCTGCTCGCCGCCGGCTCCGTGCTCCACCACGGCTCTGTCGACGACCTCCACGC
CCTGCTCGCCGGCGCCGGGCTCAGCCTGCCCCCGCACGTGGACGCCGTCGAGTTCGCCAT
CGACTCCGTGGACGAGCTCCGCCTCCACCTGCACCTCCAGCAGCAGCATCAGCGCGACCG
CCGGTGCACCCTGCAGCAGCTCTTCCAGCAGCACAAGCTCCAGGCCCAGGCCGACGACTC
CACTTCAGCAGGCACGCTCGCCGCGGGAGGAACCAGCGGGCAACACCGGTACGCCAACTC
GTGGCCGGTGGAGGTGGCTGTGCTGTCGCAGCGCT

Homology of Contig U35_32057 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None