barSeed - Barley Seed Development Database

Probe CUST_23594_PI390587928

Source Contig U35_41969

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23594_PI390587928	Hv_44K_v2	TTCTCAGAGAAAGGAAATATCATCTCAGGGCAGCCTTTTGGAATCATCTTCGTCATTCAT	561	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361911	3703	2e-24	1362 - 1421	100	60 / 60	plus	ABC18383
MLOC	MLOC_16145.1	3059	2e-24	859 - 918	100	60 / 60	plus	ABC18383
JLOC1	JLOC1_11103.2	2957	8e-25	299 - 358	100	60 / 60	plus
JLOC1	JLOC1_11103.1	3444	8e-25	1014 - 1073	100	60 / 60	plus
Harvest21	ABC37309	621	3e-25	562 - 621	100	60 / 60	plus
Harvest35	U35_41969	621	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_41969 621 Hv_44K_v2
GGCTTCCACACCCTTTGATCGCCTTGGAAGCAACTATAGGACACCAAATAAATCAGCAAT
ACACAAAATGTCATCATCTCCTTATTTTAAGGCTCCTGTTTCTTCCACAGACATATGTGG
TACTGTATCTTCATCTTATCAGACTGCAAACAGCATTCATACGTTTGGCAGGCAGCTCCT
TAAGAGGAAGAATATTGCTCTCAACAATGAAACTGACTCTGTTGGCCCCATACGCAAAAT
GCACCAAAGATACAACAGAGTATCATCACTCTCGGAAACATGGCCTGGTTATCGTGAGTA
TCCTGGTAGTCATGCAACCAAACTGGATGAAGATTTCGAACACTCCACACAAACACAAAA
GCGTCTGTGTCTGGCTGAAGTTGACAATGGCACTCTAGGTATCTGTGGCAACAACTTTGT
TCAAGCACCAGCTCAATCAACTGAGATGGCTGCAAAGATATTGAAACAACTTGATACACT
AGTGTCTTCACCTTCAGAGAAGGAAAGCTCACCAGAAATGAAGCAAAAGCTTGGAAATGC
CCTGGATGTTGAGGATTCTATTTCTCAGAGAAAGGAAATATCATCTCAGGGCAGCCTTTT
GGAATCATCTTCGTCATTCAT

Homology of Contig U35_41969 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g27090.1	1031	1e-62	protein\|expressed protein
Brachypodium v1_2	Bradi4g07760.1	1073	7e-76
Arabidopsis v10	None