barSeed - Barley Seed Development Database

Probe CUST_23592_PI390587928

Source Contig U35_27679

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23592_PI390587928	Hv_44K_v2	AGTCCTTTTGGTTAGTTTGGACTTTGGAGAGAGCTTGATTTGGTGATGAGGAAGCAGCAG	117	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375581	1973	2e-24	30 - 89	100	60 / 60	plus	ABC23909 ABC32195
MLOC	MLOC_22776.1	799	2e-24	447 - 506	100	60 / 60	minus	None
JLOC1	JLOC1_15779.1	759	8e-25	254 - 313	100	60 / 60	plus
Harvest21	ABC22465	667	3e-25	118 - 177	100	60 / 60	plus
Harvest35	U35_27679	667	3e-25	118 - 177	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_27679 667 Hv_44K_v2
CAGCGACGTGGCCTTTCTTCCCCCAATTCCCCCTGCCTGCCCCCAGCGCGGCTATATAAC
CTGCCATCTTTTCCTCCCAGCCTCACACCAAGAACCCCACATCAATCGACTAGAGTGAGT
CCTTTTGGTTAGTTTGGACTTTGGAGAGAGCTTGATTTGGTGATGAGGAAGCAGCAGGGT
TTAAGCGGCGTCGGCGCCGATGATGTGCAGTGGGACAAATGGGTGGACGACTCCTCCGTC
AGCTACCGCGGCCGCGTGCCCCTCCGCGCCGCCACCGGCTCGTGGAGGGCCGCCATGTTC
ATCATCCTGATTGAGTTCAGCGAGCGGCTGAGCTACTTCGGCATCGCCACCAGCCTCATG
ATCTACCTCACCAAGGTGCTGCACCAGGACATGAAGGTCGCCGCCGTGAACGCCCAGTAC
TGGATGAGCGTCACCACCCTCATGCCGCTCCTCGGCGGATTCCTCGCCGACGCCTACCTC
GGCCGCTTCCGCACCGTGCTCCTCTCCACCGTCGTTTACCTACTTGGCCTCATCCTGCTC
GCCCTGGCGCAGCTGGCGCCGGGACTGAGGCCGAGTGGCGCCTCGGTGCCGCGGGTCCAC
GAGACGCTCTTCTTCGTCGGGATCTACCTCGTGTCCGTCGGCACCGGCGGCCACAAGCCG
GCGCTCG

Homology of Contig U35_27679 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60850.1	586	5e-56	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi1g03500.1	589	2e-64
Arabidopsis v10	None