- Probe CUST_23590_PI390587928
- Source Contig U35_39651
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23590_PI390587928 | Hv_44K_v2 | GGTGATGAAGATCAGTCCATCTTCAGTTTCAATGGTGCCGATGTTTCTGGCTTTGATTCA | 561 | GeneList: orange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.724 | 0.968 | 1.142 | 1.171 | 0.961 | 0.716 |
| Raw | 88.247 | 168.638 | 191.573 | 287.555 | 88.665 | 72.175 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365316 | 4324 | 2e-24 | 1783 - 1842 | 100 | 60 / 60 | plus | None |
| MLOC | AK249062.1 | 3940 | 2e-24 | 1749 - 1808 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61856.3 | 1240 | 2e-24 | 288 - 347 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61856.4 | 1351 | 2e-24 | 228 - 287 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61856.1 | 1259 | 2e-24 | 415 - 474 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_61856.2 | 1230 | 2e-24 | 289 - 348 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_40445.4 | 986 | 8e-25 | 267 - 326 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40445.3 | 1154 | 8e-25 | 284 - 343 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40445.2 | 1108 | 8e-25 | 289 - 348 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_40445.1 | 1137 | 8e-25 | 289 - 348 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC35840 | 624 | 3e-25 | 562 - 621 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39651 | 624 | 3e-25 | 562 - 621 | 100 | 60 / 60 | plus |
Contig Sequence (624 bp)
>U35_39651 624 Hv_44K_v2 GCCTCGTGCCGCGGGAAGGCAGTTGCCAAAGAGATCATAATAAGCACATTTCACTCCTTC TGCTTGCAGCTTTGCAGGACCCATGCTGAAAAGCTAGGCCGTACATCTGAATTCATAATA TATGGCCATGGGCAACAGAGGAGGGCCATTGTTGAGGCAGAACGCCTGTTGGAGCATGGC AAAAGTGATGGTTTAGGAGATGCAGTTAAGCAGTGTGATGGAGACATTAAAAATTCCTTT AAAGACAAAGCTAAGAAGTGGTTGAAGTTTGTTACACAGGCGAAATCTTCAGGACAAACT CCCGAAGAATATGAAAAGAAGGGGGATTTGACAGGAGCTTCGATTCTTCGGCACTACAAT GAAATACTAGTGTCTTGTAATGCTCTTGATTATCATGATTTTATTAACTCATCCATAACT CTTCTCACGAAGTTTCCTGAAGTATACAAAGAGTGCCAAACCACATGTCAGGCAATAGTA GTTGATGAGTTTCAGGATACCAGTGCTATGCAATATTTTCTTCTGAAACTTCTAGCTTCT CACAATCATATAACCATTGTTGGTGATGAAGATCAGTCCATCTTCAGTTTCAATGGTGCC GATGTTTCTGGCTTTGATTCATTT
Homology of Contig U35_39651 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g30980.1 | 1166 | 2e-120 | protein|uvrD/REP helicase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g27110.1 | 1193 | 3e-123 | |
| Arabidopsis v10 | AT4G25120.1 | 1149 | 5e-81 | | Symbols: SRS2, ATSRS2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12890694-12898309 FORWARD LENGTH=1149 |