barSeed - Barley Seed Development Database

Probe CUST_23584_PI390587928

Source Contig U35_39657

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23584_PI390587928	Hv_44K_v2	GTATCCTGCATTTCTTTTCAAGCAGCAACTTACAGCATTTGTGGAAGGCTTATATGGAAT	303	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74715.1	1264	2e-24	65 - 124	100	60 / 60	plus	ABC18292
JLOC1	JLOC1_49818.1	1534	8e-25	128 - 187	100	60 / 60	plus
Harvest21	ABC35847	366	3e-25	304 - 363	100	60 / 60	plus
Harvest35	U35_39657	366	3e-25	304 - 363	100	60 / 60	plus

Contig Sequence (366 bp)

>U35_39657 366 Hv_44K_v2
CATATACATTTGTCTAGGTCACTGGAAGATCTTAGAAACAGAAAAAACATCTGTTTTTGA
TAGGCTAATTCAAATTTTTGGTTCGGCGATGCAGTATCATGATAGCAATGAGGATCTTGC
ATACTGGCTATCGAACTCATCGACTTTATTGATTATACTACAAAAGAGCCTAAAAGCTGT
TGGCTCAACCGGAACCACTCCACATAAAAGACCACAGAGTCAGTCATCGTTCCTTGGGAG
GATGGTATTTCGTTCTTCCACCATTACTGTCGATATGGATCTTGTGCGTCAAATCGAAGC
CAAGTATCCTGCATTTCTTTTCAAGCAGCAACTTACAGCATTTGTGGAAGGCTTATATGG
AATGAT

Homology of Contig U35_39657 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64290.1	1472	6e-58	protein\|myosin, putative, expressed
Brachypodium v1_2	Bradi3g29700.1	1515	1e-67
Arabidopsis v10	None