- Probe CUST_23579_PI390587928
- Source Contig U35_41972
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23579_PI390587928 | Hv_44K_v2 | TTTCTGGATCACTGTTGATAAAACCTGGAGTTTATCCGGAGCAAAGAGCATGCAATGAGG | 577 | GeneList: skyblue3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.507 | 1.027 | 1.820 | 1.031 | 0.880 | 0.524 |
| Raw | 46.219 | 40.326 | 75.325 | 60.157 | 19.776 | 13.382 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60426.2 | 6879 | 2e-24 | 6679 - 6738 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| MLOC | MLOC_60426.5 | 7355 | 2e-24 | 6662 - 6721 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| MLOC | MLOC_60426.4 | 7390 | 2e-24 | 6678 - 6737 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| MLOC | MLOC_60426.3 | 7290 | 2e-24 | 6595 - 6654 | 100 | 60 / 60 | minus | ABC17350 ABC35051 ABC37315 ABC37969 |
| JLOC1 | JLOC1_39400.2 | 6904 | 8e-25 | 254 - 313 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39400.1 | 6875 | 8e-25 | 219 - 278 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC37314 | 640 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_41972 | 640 | 3e-25 | 578 - 637 | 100 | 60 / 60 | plus |
Contig Sequence (640 bp)
>U35_41972 640 Hv_44K_v2 GCGCGCGCGCGGATCCCGGCCGAATCGGCGGGGACGCGCCCTGATCCGCTCCTAGGGTTT CGCGGGGAACCCGGCCCATGCTCGCGGCGGCGGCAGCGGCATGCTTCTGCTGACTCGCTC GGCGAGATGCAGAGGTACGCCGGCGCTGGCAACAGCAACAGCTCTGGGTTTAGCGGCGGC CCGGCATCGGCCGGCAGCAGGGACAGCTCCAGGCTCGATGTGTCGCCCTACGCTCCGCCC AATTACCCCCTGAACCCAAGGCGACAACAACAGCTAGCTCCGTACAGGCTAAAGTGTGAC AGGGAACCGCTTAACAACAAGCTTGGACCACCTGACTTCTATCCTCAAACACCAAACTGT CCTGAAGAGACATTAACCAAAGAATATGTACAGTCTGGGTACAAGGAGACTGTTGAAGGA ATTGAGGAAGCAAGAGAGATCGTACTCAGTCATATCTCATACTTCTGCAAGCCAGATATC GTTGGAAAATGCAAGGAGGCACTAAAGAAACGGTTAAGAGCTATTAATGACTCTCGCGCT CAAAAAAGAAAGGCTGGCCAAGTTTATGGAGTTCCTCTTTCTGGATCACTGTTGATAAAA CCTGGAGTTTATCCGGAGCAAAGAGCATGCAATGAGGACT
Homology of Contig U35_41972 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g45400.1 | 2176 | 7e-67 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g21177.1 | 2143 | 2e-55 | |
| Arabidopsis v10 | AT4G00450.1 | 2253 | 9e-54 | | Symbols: CRP, CCT | RNA polymerase II transcription mediators | chr4:202425-210666 FORWARD LENGTH=2253 |