barSeed - Barley Seed Development Database

Probe CUST_23577_PI390587928

Source Contig U35_41973

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23577_PI390587928	Hv_44K_v2	CGTCTTTATTTGATATTCTCGAGGAAGATATAGTTGCTGAACAGCAACAATTGCATGAAA	14	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60426.2	6879	2e-23	4858 - 4915	100	58 / 58	minus	ABC17350 ABC35051 ABC37315 ABC37969
MLOC	MLOC_60426.5	7355	2e-23	4841 - 4898	100	58 / 58	minus	ABC17350 ABC35051 ABC37315 ABC37969
MLOC	MLOC_60426.4	7390	2e-23	4857 - 4914	100	58 / 58	minus	ABC17350 ABC35051 ABC37315 ABC37969
MLOC	MLOC_60426.3	7290	2e-23	4857 - 4914	100	58 / 58	minus	ABC17350 ABC35051 ABC37315 ABC37969
MLOC	MLOC_60426.1	6688	2e-23	4857 - 4914	100	58 / 58	minus	ABC17350 ABC35051 ABC37315 ABC37969
JLOC1	JLOC1_39400.2	6904	1e-23	1994 - 2051	100	58 / 58	plus
JLOC1	JLOC1_39400.1	6875	1e-23	1965 - 2022	100	58 / 58	plus
Harvest21	ABC37315	640	3e-25	15 - 74	100	60 / 60	minus	ABC37315
Harvest35	U35_41973	640	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (640 bp)

>U35_41973 640 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATGCAATTGTTGCTGTTCAGCAACTATATCTTCCTCGAGAAT
ATCAAATAAAGACGATCCAGGAAGCTGCTTTAAAATTCTGGGATGCCTCCTTTTCCTTTC
CATATCTAGAAGAGTACCATTCTTATCGGTTACTCCACTAATAATTAGCTGCCTTACATA
AGCTGGGGGATAAAATACACCGCTACGAATAAGCTCTATGATGAGAACATCAACACGTTT
AAAACCTGCAGCACTGCTAACCTCATGTTGATCCAGCCAACACACAATAATGTCATGCAA
TGGACCAGGACTTTCAAAGATATCCTTCTTTTCCTTCTTCTCCTCCTCATTTTTTCCGTT
ACTTCTCAGTCCAGAAGAATCACCCACTTTAGTTGCAGCCACTGAAGCATCATTCAGCGA
AGAACCTTTACCGATATTATTCACTGCAATGCGACTGCTACTCTTAGACCGAGACAATTT
ATTCATCTCGGTCATTTTGTTTTTCAGGATAGACACCGCCAGGTGTATCTGAGATAAATC
TCTTCTTCCTGTCAATTTTACATTCTGACTGGGAGATGTACGACAATCACGATAATCACA
TGTTGCCCATTCACAAAGAAAAAATATGGAACAGATTAGG

Homology of Contig U35_41973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g45400.1	2176	1e-101	protein\|expressed protein
Brachypodium v1_2	Bradi1g21177.1	2143	4e-110
Arabidopsis v10	None