- Probe CUST_23551_PI390587928
- Source Contig U35_24995
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23551_PI390587928 | Hv_44K_v2 | TCAAGTCCGGTTTGTTGGCCGGGTTGATTATATATATCAACCAGTATCCTACGTAAAAAA | 115 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.715 | 1.350 | 1.860 | 0.910 | 0.643 | 0.471 |
| Raw | 26.493 | 29.074 | 36.878 | 28.573 | 6.768 | 4.493 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61013.1 | 1052 | 9e-22 | 769 - 823 | 100 | 55 / 55 | plus | None |
| Harvest35 | U35_24995 | 186 | 3e-25 | 116 - 175 | 100 | 60 / 60 | plus |
Contig Sequence (186 bp)
>U35_24995 186 Hv_44K_v2 CCACGCGTCCGCAGATTTACAGTATAGTTCTACACTTCTACTTCTACTAGGTGCGTCAGT TGTTTCTGTGCATGTATGGGACGACGTTATTTGTTGTTTAAATTCTTTTATTTATTCAAG TCCGGTTTGTTGGCCGGGTTGATTATATATATCAACCAGTATCCTACGTAAAAAAAAAAA AAAAAA
Homology of Contig U35_24995 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |