barSeed - Barley Seed Development Database

Probe CUST_2354_PI390587928

Source Contig U35_11427

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2354_PI390587928	Hv_44K_v2	GAGCTACTCTTCATGTTTGCATACATGTAATTGCAAAGACAGATTTTTGGTGGTACATAT	756	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.177	0.334	0.790	2.009	1.147	1.409
Raw	11.995	32.069	70.572	286.057	56.017	73.514

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5316.2	862	2e-24	3 - 62	100	60 / 60	minus	None
MLOC	MLOC_5316.1	1234	2e-24	99 - 158	100	60 / 60	minus	None
JLOC1	JLOC1_3411.2	1154	8e-25	931 - 990	100	60 / 60	plus
JLOC1	JLOC1_3411.1	1144	8e-25	921 - 980	100	60 / 60	plus
Harvest35	U35_11427	842	3e-25	757 - 816	100	60 / 60	plus

Contig Sequence (842 bp)

>U35_11427 842 Hv_44K_v2
GTGAAGCAGCTGCGGGAATTTCTCACGGCAACAAGCACCTGTGTGCGTGCGTGTGTGATG
GCTGGGGAGGAAGCCAAGAAGGCGGTGCCGGCCGCTGCGCCGGAGGCGGTCGCAGAGAAG
GACGTGCCGGTGGTCATCCCGCCTCCCCCGGGGGCCAAGCCACCGGCCGACGACTCCAAG
GCCCTCGTCGTCGTCGACAGCAAAGTTGCCGAAAAACCTCAGGCTGAGAAGAAGAACACG
CACAGGGGCTCACATGAAAGAGACGTCGCTCTTGCAAAGGTCGAAACGGAGAAGATGAGC
TCTTTGATCAAAGCATGGGTAGAGAACGAGAAGGCAAAAGCTGACAACAAGGCTGCTAAG
AAGCTATCGTCCATTCTTTCATGGGAGAACACAAAGAAGGCAACCATAGATGCTCAGCTG
AAAAGGAAGGAAGAAGAGTTGGAAAAGAAAAAGGCTGAATACGCTGAGAAGATGAAGAAC
AAAAAGGCAATTGCCCACAGGGAAGCTGAAGAAAAGAGAGCAATGGTGGTGGCCCGGCGT
GGTGAACAAGTTCTCAAGGCTGAGGAAATGGCAGCAAAGTACCGTGCAACCGGGCTGGCT
CCCAAGAAACTTCTCGGATGTTTCGGGGCATAAGAAGTAGCTCAACCTTGGAAGTGATTT
GTTCTGTGTAGTTGTTTTTCTTCTTTATGTTCAGAAAACGTGTCTTGTTTTTCATGGTTA
AGTTTGCTACTCTTCATGTTATCTTTTTTTTGCTGGGAGCTACTCTTCATGTTTGCATAC
ATGTAATTGCAAAGACAGATTTTTGGTGGTACATATATAGCATCCAAAAAAAAAAAAAAA
AA

Homology of Contig U35_11427 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g50000.1	194	2e-53
Arabidopsis v10	None