barSeed - Barley Seed Development Database

Probe CUST_23542_PI390587928

Source Contig U35_21008

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23542_PI390587928	Hv_44K_v2	AGGTTCTCCCCAATCGGGAATACGCCCGTTGTGGAGACCATCAAAGTGGAGGATCCGAAG	331	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6357.1	2153	2e-24	1610 - 1669	100	60 / 60	minus	ABC04687 ABC04689 ABC12043
JLOC1	JLOC1_4134.1	2203	8e-25	410 - 469	100	60 / 60	plus
Harvest21	ABC26606	471	3e-25	306 - 365	100	60 / 60	plus
Harvest35	U35_21008	760	3e-25	332 - 391	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_21008 760 Hv_44K_v2
AGCCCCAGCTAGCTAAATGAGCAGCTGCCTTTGCTGCTTTTGCTCTGCTCTTCCCTCCCC
TTCCTTCCCTTTCTCCCCCCTCCACCGGGCTCGCTGCCGGTGGCCGCCGCTTCCGCCGCC
CGCTTTATCCCCCGCTGATTTACACGTCAGCTGCTCAGCTCGAGTCGCATAGCAAGGCTG
TGGAGGTCCTGTGCGGAGCAAAGAACTACTCCTACTCCCGGAGGAGATGAAGTCCCGGAG
CTCTGCGAGGGGCGAGCCGAGGAGGTTCGGGAATGTGGCTCTCCTGGCCCTCATGCTCTG
CTCCCTCGTCGCGCTCTCGCTCATCAGGGCAAGGTTCTCCCCAATCGGGAATACGCCCGT
TGTGGAGACCATCAAAGTGGAGGATCCGAAGCCGGTGTTGCCGAGCAAGCCGGCTGTCGC
CGCGCAGGCCGGCGATGGCGCCGACGAGGCCGCCGCAGTTGCTGTGGAGGAAGACAAGGA
GGAGGAAATTCAGCCCAAGACCGAGCAGGCCGTGGGCGCCACAGTGCGGCCAGCCAAAGC
CGCCGTGGTCGTTGACGCCAGCAAGCCGGTGTGCTACGAGACGAGTCGGCGCTCCGACAC
CTGCGAGGCAGCCGGCGACGTGCGCCTGGTGGGGAGAAGCCAGACCATCTACATCGATAC
GCTGGAGCGGGAATGGAAGACCAGGCCGTACTGCCGGAAGCACGATACCTACGCGTTGTC
CCACNGTCAGGAGTGGTCTCTGAAGCCGTTCCCTCCGGCG

Homology of Contig U35_21008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None