barSeed - Barley Seed Development Database

Probe CUST_23540_PI390587928

Source Contig U35_36971

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23540_PI390587928	Hv_44K_v2	TCATCTGACTTTAGAAACACCACTGTCAACGGCGATCTACGTTACTTTGTTTGGGACGAT	374	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366669	1818	2e-24	1018 - 1077	100	60 / 60	plus	ABC43795
MLOC	MLOC_24089.2	1084	2e-24	878 - 937	100	60 / 60	minus	ABC43795
MLOC	MLOC_24089.1	809	2e-24	605 - 664	100	60 / 60	minus	ABC43795
MLOC	MLOC_24089.4	1156	2e-24	689 - 748	100	60 / 60	minus	ABC43795
MLOC	MLOC_24089.3	700	2e-24	524 - 583	100	60 / 60	minus	ABC43795
JLOC1	JLOC1_16589.1	1039	8e-25	834 - 893	100	60 / 60	minus
JLOC1	JLOC1_16588.2	863	8e-25	147 - 206	100	60 / 60	plus
JLOC1	JLOC1_16588.1	856	8e-25	147 - 206	100	60 / 60	plus
Harvest21	ABC32496	540	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_36971	540	3e-25	375 - 434	100	60 / 60	plus

Contig Sequence (540 bp)

>U35_36971 540 Hv_44K_v2
GCACGCTCAGCGCCTGGGACTATCCTCTCGTCACGCAGGACGATCTCTTTTATGCATTTT
CTTCTGTACCAAGGCACCTCAACTTTATTGATCACACAAGTGACCTCGGATGGAAAGAGC
ATGAAAGGTTTGAAAAACTTATTGTTGACTCAAGTCTATATATGGACAAGAATACCCAGC
CCTTTCCTGCGACAGAAACAAGGCAAATGCCTGAGGCATTCAAGATATTCACAGGCTCTC
CCTGGGTAATTCTGAGTAGGAACTTCACTGAACATTGCGTGCATGGTTGGGACAACCTCC
CCCGCAGGCTACTGATGTACTTTGCCAATGCTGCCTACTCCATGGAGTCCTATTTCCAGA
CTGTCATATGCAGTTCATCTGACTTTAGAAACACCACTGTCAACGGCGATCTACGTTACT
TTGTTTGGGACGATCCTCCTGGGCTGGAGCCGCGTATTCTTGATGAAACACATTTCGATA
ACATGGTGAAGAGCGGCGCTGCCTTCGCAAGGCGGTTTGCGGAGGATGCACCAGTGCTGA

Homology of Contig U35_36971 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g23580.1	402	2e-112	protein\|xylosyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g01620.1	403	3e-77
Arabidopsis v10	AT1G71070.1	395	2e-78	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr1:26807440-26809152 REVERSE LENGTH=395