barSeed - Barley Seed Development Database

Probe CUST_23538_PI390587928

Source Contig U35_36974

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23538_PI390587928	Hv_44K_v2	ACTGTGACCAGTACACTCTCATGTTCCATGCTCTGGTCACCTGAAAAGAGCAATCTCAAA	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72453.2	3667	2e-24	1709 - 1768	100	60 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72453.3	3767	2e-24	1709 - 1768	100	60 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72453.4	4092	2e-24	1709 - 1768	100	60 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72453.1	4304	2e-24	2336 - 2395	100	60 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72453.5	2892	2e-24	923 - 982	100	60 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72452.2	3955	2e-24	1566 - 1625	100	60 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72452.3	4796	2e-24	1550 - 1609	100	60 / 60	plus	ABC14166 ABC39907
MLOC	MLOC_72452.4	1718	2e-24	1593 - 1652	100	60 / 60	plus	None
MLOC	MLOC_72452.5	1716	2e-24	1591 - 1650	100	60 / 60	plus	None
JLOC1	JLOC1_48190.3	2421	8e-25	1900 - 1959	100	60 / 60	minus
JLOC1	JLOC1_48190.1	2431	8e-25	1910 - 1969	100	60 / 60	minus
JLOC1	JLOC1_48189.1	1706	8e-25	1565 - 1624	100	60 / 60	plus
Harvest21	ABC32499	588	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_36974	588	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (588 bp)

>U35_36974 588 Hv_44K_v2
GCACGATTACAGGAAAGATGTCATCTCCATCCGCATGGGGAAGATAATCAGCAAGAAGGA
GAAGAACTGGACGACTCGCATCGGAAACGACCGCCATCTGATCTGCATCGAGGACCCTTT
CGAGACCGGCCATGACTTGGGACGCGTAGTCGACAGACAGACAATCAGGATCGTCAGGGA
GGAGTTTGAGCGGGCTGCTGCCGTACTGCAGCATGACGACGACCCTTGCGCAACCCTTTT
CGAGCCCTACAATTACGAAAACTAAACATCAAAAACACCTGAAAATTCAGATAACATTTC
TGCCAGGAAGGCGAAGGTTGTGATGATGAACTATTTGAACATTCTGGTAAACAGAAGAAA
TGAATGAACTGGGTTTGCATTAAAGAAAAGATGAAACCGGGTCAGGTGCATTCACCTGCC
AGAAGATGTGCCGTGATTCGTTGCAGAGAAAACTGATTTGGTAGGACTATGCTCTGCTGG
AAGATGAGCTGTGCCAGCTGCAGGCTGCAAAGAAGTTCACTGTGACCAGTACACTCTCAT
GTTCCATGCTCTGGTCACCTGAAAAGAGCAATCTCAAACCCTTTTTTA

Homology of Contig U35_36974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None