- Probe CUST_23537_PI390587928
- Source Contig U35_36975
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23537_PI390587928 | Hv_44K_v2 | CTGAACAATACAAATGCACAGCAATCGATAGCATTGTGCATGCCATCTTCATGCAGCAAG | 563 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.285 | 1.751 | 2.790 | 3.474 |
| Raw | 4.971 | 6.587 | 393.457 | 3548.230 | 1996.033 | 2765.067 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45609.1 | 564 | 2e-24 | 383 - 442 | 100 | 60 / 60 | minus | ABC00518 ABC00817 ABC28944 ABC32433 ABC43834 |
| MLOC | MLOC_64273.1 | 1324 | 3e-21 | 879 - 938 | 97 | 58 / 60 | plus | ABC00518 ABC00817 |
| MLOC | MLOC_22460.1 | 246 | 3e-21 | 179 - 238 | 97 | 58 / 60 | minus | ABC00518 ABC00817 |
| JLOC1 | JLOC1_29606.1 | 580 | 8e-25 | 399 - 458 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_42189.1 | 1301 | 2e-21 | 879 - 938 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC43786 | 601 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32500 | 623 | 3e-25 | 564 - 623 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00817 | 1613 | 3e-25 | 1000 - 1059 | 100 | 60 / 60 | plus | ABC00817 |
| Harvest21 | ABC00557 | 617 | 4e-24 | 560 - 617 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC52731 | 600 | 1e-23 | 192 - 251 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC52722 | 643 | 1e-23 | 459 - 518 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00810 | 837 | 6e-22 | 402 - 461 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00764 | 1235 | 6e-22 | 800 - 859 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC00518 | 1184 | 6e-22 | 791 - 850 | 97 | 58 / 60 | plus | ABC00518 |
| Harvest35 | U35_45222 | 601 | 3e-25 | 380 - 439 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36975 | 623 | 3e-25 | 564 - 623 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_228 | 708 | 3e-25 | 545 - 604 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22 | 1147 | 3e-25 | 676 - 735 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_216 | 617 | 4e-24 | 560 - 617 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_50535 | 600 | 1e-23 | 192 - 251 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_50529 | 643 | 1e-23 | 459 - 518 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_208 | 918 | 1e-23 | 682 - 741 | 98 | 59 / 60 | plus |
Contig Sequence (623 bp)
>U35_36975 623 Hv_44K_v2 GCTAAGAAAGGTTTAGCTAACACAAATCCACCATGAAGATCTTAATCATCCTTACAATCC TTGCCATGGCGACTACCTTCGCCACCTCTGAGATGCAAGTCAACCCTAGTGTCCAAGTAC AACCGACACAACAACAACCATATCCCGAGTCTCAGCAACCATTCATCAGCAACCACAACA CCAATTTCCCCAACCCACACAACAATTCCCCCAACGGCCACTACTACCATTTACTCACCC GTTCCTAACATTCCCCGACCAACTACTCCCTCAGCCACCACACCAATCATTCCCCCAGCC CCCGCAATCATACCCTCAGCCACCGTTACAACCTTTTCCTCAGCCCCCGCAACAAAAATA TCCCGAGCAACCACAACAACCATTTCCTTGGCAACAACCAACTATTCAGCTATATCTCCA ACAACAACTGAATCCGTGCAAGGAGTTTCTCTTGCAACAGTGCAGGCCTGTGTCATTGNT ATCGTACCTCTGGTCAAAGATCGTGCAACAGAGCAGTTGTCGGGTGATGCAGCAACAATG TTGCCTGCAATTGGCACAGATCCCTGAACAATACAAATGCACAGCAATCGATAGCATTGT GCATGCCATCTTCATGCAGCAAG
Homology of Contig U35_36975 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |