barSeed - Barley Seed Development Database

Probe CUST_23532_PI390587928

Source Contig U35_48951

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23532_PI390587928	Hv_44K_v2	GGCCCAAGATTCTCAACTGAAAAACATGTATCTAAATATATTCAGGGCAACTCATGCTTC	29	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.842	1.591	1.753	1.337	0.531	0.752
Raw	29.546	88.837	83.469	98.942	13.738	21.956

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376001	2173	2e-24	2100 - 2159	100	60 / 60	plus	None
Harvest21	ABC50800	630	3e-25	30 - 89	100	60 / 60	minus
Harvest35	U35_48951	630	3e-25	30 - 89	100	60 / 60	minus

Contig Sequence (630 bp)

>U35_48951 630 Hv_44K_v2
GAGATCATAACATTTCTGAAAATACTATGGAAGCATGAGTTGCCCTGAATATATTTAGAT
ACATGTTTTTCAGTTGAGAATCTTGGGCCTTTGCGATAACTTTACACTGGACGCATCATT
TTTCATCGATTTGGACCGCACGTGAAATCTGGATCTTTTACTAAGTTGATAGTATGCTCA
GGATTTAGGCCGTGCAGTTCGAAGATTACAACAACGTTGTCTCCAGATTTGAGCAGTGGT
GCGGGAACATATAGAGCACATTGTGGTCCCATTGCCGGCCAGAACCTTCCAATGTTGAAG
TTGTTCACAAAAGCAACCCCTTTGTTCCAACCACGAAATGATATGAATGTATCCTTTATC
GTGCTATTGGAGTCAATGTGGAAATGACCTTCATAAAATTCTGGCTCTTCTGAATTGCCA
TTTTGATAGAATGACAAATCACGTAACTTATTTTGTGAACCACTATGAATGGACACTTTG
CTAGCTCTGGCGTCAGTGATCTGCAGGATTGGTTGGAATTTCGAAAGGTTGCCCAGTAAA
TCGAATGATAATGGATACATTCTCCAGTTACGGAGAGTAACACCATCAATTTCAACAGGA
GATAATATACCCTTCTGGTCAAAAATGTAT

Homology of Contig U35_48951 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46200.3	559	9e-86	protein\|beta-galactosidase 8 precursor, putative, expressed
Brachypodium v1_2	Bradi2g18440.2	675	4e-94
Arabidopsis v10	None