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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_23527_PI390587928Hv_44K_v2TGGATGCAAATCAAATCCCACTGTACCTGGACAACGCACGAGTCTTGGCTTTTGAACTTT18GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6791.7471.1520.7790.4790.495
Raw 432.627664.097405.952431.38191.354104.858



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_72321.116372e-2439 - 9810060 / 60minus ABC26431 ABC34448
MLOCMLOC_72321.217002e-2439 - 9810060 / 60minus ABC26431 ABC34448
JLOC1JLOC1_48094.416188e-251533 - 159210060 / 60plus
JLOC1JLOC1_48094.316738e-251588 - 164710060 / 60plus
JLOC1JLOC1_48094.220648e-251979 - 203810060 / 60plus
JLOC1JLOC1_48094.115898e-251504 - 156310060 / 60plus
Harvest21ABC264317323e-2519 - 7810060 / 60minusABC26431
Harvest35U35_489586753e-2519 - 7810060 / 60minus



Contig Sequence (675 bp)

>U35_48958 675 Hv_44K_v2
GTTGAACAGNAAAAAAAAAAAGTTCAAAAGCCAAGACTCGTGCGTTGTCCAGGTACAGTG
GGATTTGATTTGCATCCATTTCTTGCGCGCAATACGATATGTCATCACAAAGTATCAAAT
TACACTTGCCCTAAAAAAATATCACATTACTAACTGCACCTCAAAAATATGGTTGTGGGT
GAAAGGCACAACGTTGGACTGGTATTTGTATACGGAGTAGATCCAAAGGCTGAGCTTCGT
CCATACATACCACCTTACTTTGCACGCATCCACCTCTTCACTATAATTCCTGCTAGGCCA
TCGGCAGATTGATCGCAAGTCTTCAAGCTCGGTAAACAAGGTGAATATCACCTGCCAAAT
GATTGAAAACTTCTCTATGCCCCGGCAAACAGATAGCGCAGCAAAGGAGCCACAACCGCT
ACACTAAGACTATTACCCAGCATGGCATACTGCTGTCTGAGGCCTATGTGATCCGGAAAA
CGGAAACTCGAGGGAAAAGAATGCAAATTGGCGACCTCTCGAGGTGTGAAAAAACGTAGA
CCCAACTCATTTAATGAAGAAATTTCAAGGTTCTCTTTTGGAACTGGTCTGACGTTTTTA
GATGTAGCCAGTACAGAGCCTGTGCCCTTCACATAGCGATAATAACTTTTAGTAAAACAG
CAGCACCGTTTTGAT



Homology of Contig U35_48958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi2g43310.13775e-55
Arabidopsis v10None