barSeed - Barley Seed Development Database

Probe CUST_23526_PI390587928

Source Contig U35_48959

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23526_PI390587928	Hv_44K_v2	CAGCAGTTGTGTTTCTGAGAACAATTGTGATGCTGAGCATGTAATATACAATTTGATCTC	18	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.318	2.508	1.234	0.661	0.201	0.235
Raw	1442.367	2509.525	1042.374	928.331	93.011	121.051

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20963.1	942	3e-22	138 - 196	98	59 / 60	minus	ABC04876
JLOC1	JLOC1_14537.1	1198	1e-22	887 - 945	98	59 / 60	plus
Harvest21	ABC04876	970	5e-23	763 - 821	98	59 / 60	plus	ABC04876
Harvest35	U35_48959	633	3e-25	19 - 78	100	60 / 60	minus
Harvest35	U35_1817	970	5e-23	763 - 821	98	59 / 60	plus

Contig Sequence (633 bp)

>U35_48959 633 Hv_44K_v2
GGTGNCATAATCATTTAGGAGATCAAATTGTATATTACATGCTCAGCATCACAATTGTTC
TCAGAAACACAACTGCTGCAGCAACTAACAATCACTCATAGATAGAAATGCTTGATAAGA
AGGAACTTGCAGTAGTTCGAGCGAACAATTCCAATATGAACTCAGAAGATCCATCTTTCA
CATTCTAGACAACTCAACAGGTAGATTATTGTCCTCCTTTACACCAAAGCTTGCTGGTTC
AGTTACTTCAACACGGCCCCATTTGTCAACAGCAAGCCTCATTGACCCTTTGAACATATC
AATCTTTGCATTGCGGATAATGACAGTGTTGCCAGGCTTCAACACATCAACCTGGTCGTT
GCGGGCGGTGAAGAGGACGCAGCCGGTCTCGTCGCCGATGAGGCACTCGGCGATCCTGGT
GGGCTTGGCCGCTGGGCCGGGGCCGCCAGTGGCGCGGGCCTTCTGGAGGACGGTCTTGGA
GCTGAGCACCTTAGCGACGAGCGTGTGGCCGCTGGTGACGGGCTTGAGCTGGTCCACCTT
GACGAACACCGGCTTCCGCTTCGCCGCCGCCGCCGCCGTGGCCATGGAGAGGGATACAGA
TAAGAGTTGGGAGAGGGATACAGGGCCTCGTGC

Homology of Contig U35_48959 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55030.1	141	1e-68	protein\|DNA-binding protein-related, putative, expressed
Brachypodium v1_2	Bradi2g08260.1	145	4e-55
Arabidopsis v10	AT1G23750.1	137	2e-52	Nucleic acid-binding, OB-fold-like protein \| chr1:8400638-8401171 FORWARD LENGTH=137