barSeed - Barley Seed Development Database

Probe CUST_23522_PI390587928

Source Contig U35_21013

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23522_PI390587928	Hv_44K_v2	ATCGGAACAGTCTTATTATCACTGAGTTTCAGTGGAGTTTGTGCTCTGTTCTTGATCAAA	1270	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.798	2.052	1.056	0.867	0.292	0.417
Raw	824.938	1511.239	665.824	872.496	101.388	158.988

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18638.1	1577	6e-24	869 - 927	100	59 / 59	minus	None
MLOC	AK363000	1701	7e-23	1645 - 1701	100	57 / 57	plus	None
JLOC1	JLOC1_12893.1	1183	3e-24	755 - 813	100	59 / 59	minus
Harvest35	U35_21013	1344	3e-25	1271 - 1330	100	60 / 60	plus

Contig Sequence (1344 bp)

>U35_21013 1344 Hv_44K_v2
AGGGGACTCCCATGGTGGATGGCTGAGCTCGGGGGAACCAGGGCGCGGCGTCAGTAGCCG
AAACCTCAGGTATCAACCTCCCGAAACCTCGATTTGAACCTGCCGTTGATCCAGCCTTTC
CGAGCTGAGCGGTTCCGTATCCCCGCCATAATGCCGGAACCGAGTTCGGATCCGGGCAAT
GGCAAGGGCAAGAGGAGCCTCCCTTCCTGGATGGGCTCCGGCTCCGGCGACGGCGGCGGC
GGCGGGCCGAGTCCGGGCAAGAAGAAGCACGCGGAGGCGGCCCGCGAGAGGGCTCCAACG
GCGCCGGATTTCTCCAAACTCTTGGACGGGGTGGTCTTTGTGCTGTCAGGGTTCGTGAAC
CCTGAGAGGGGCAGGCTGCGCTCCCAGGCGCTGGACATGGGGGCGGTGTACCGGCCCGAT
TGGTCCGATGATTGCACGCTTCTTGTTTGCGCGTTTGCCAACACCCCCAAGTTTCGGCAG
GTGCAGTCGGAGAACGGAACCATCGTCGCCAAGGAATGGATCTCAGAATCTCACAGCCAA
AGAAAACTCGTTGACATTGAGCCTTACCTTATGCATGCTGGAAATCCATGGCGCACAAAT
AAAGAGCCAGCCGAATCCAGTCAAGATCAGAAGAAGCCACGTAAAGAGCATGAAAAGCAA
CTTGAGAAGACTCATGCTAAGACACCGCCTTCTGTTGCCACTAAGGCAGGACATTCAGGC
GCTATAAATAAACAATTTTCTCCTTCAAAAATTAAACAATGGGCAATGGATGATTTTGCG
AAGACGATATCATGGTTGGAGAGCCAAGAAGAGAAGCCAGAGCCAAACGAATTGAAGGCA
ATAGCTGCTGAAGGGGTCATCACTTGTCTGCAGGATGCCATCGAATCCCTCGAGCAAGGC
AATGATATCAGTGGTGTGGCGGAGCAATGGAGCTTTGTCCCCCACGTTGTGGACGAGCTA
GCGCGGCTGGACGGAAAGGGATCATCGATGTTTAAAGAACAACTCGCCCAACTAGCAACC
AAATGCAAGAAAATCTACCAGGCCGAGTTTGCCCAGATGGACAGTGATGACAAGAAGGGC
AAGGAGCGTCCCGGAAAAACCGGAGTGGACGATGCTCAGTACGACAGCGATGATACGATC
GAGATGACGGAGGAAGAGATTGATCTCAGCTTGCAAACAGTTCTCAGGGATTAGTAGCTA
GGTCAGGAGAAGTTCTTTAGGAGAGGAGAGCAAGGACTGTGTATCAGTGAGCATGGTATG
GCCGTCAGTAATCGGAACAGTCTTATTATCACTGAGTTTCAGTGGAGTTTGTGCTCTGTT
CTTGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g05190.1	348	3e-153	protein\|BRCA1 C Terminus domain containing protein, expressed
Brachypodium v1_2	Bradi1g51220.1	357	5e-169
Arabidopsis v10	AT1G80420.1	353	1e-93	\| Symbols: ATXRCC1 \| BRCT domain-containing DNA repair protein \| chr1:30235444-30237163 REVERSE LENGTH=353