- Probe CUST_23519_PI390587928
- Source Contig U35_21016
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_23519_PI390587928 | Hv_44K_v2 | GTCATCTTTGTCTCCATGGCACGCTGCTGTTACCACTACTCTACTCTACTACGAGTATTT | 422 | GeneList: None MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 5.878 | 1.596 | 0.575 | 0.983 | 0.946 | 1.178 |
Raw | 1074.401 | 508.446 | 156.217 | 450.193 | 138.984 | 192.609 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_65431.1 | 1262 | 2e-24 | 80 - 139 | 100 | 60 / 60 | minus | None |
MLOC | MLOC_65431.2 | 1574 | 2e-24 | 33 - 92 | 100 | 60 / 60 | minus | ABC03674 |
JLOC1 | JLOC1_43058.1 | 1586 | 8e-25 | 1480 - 1539 | 100 | 60 / 60 | plus | |
Harvest21 | ABC23366 | 345 | 3e-25 | 246 - 305 | 100 | 60 / 60 | plus | |
Harvest35 | U35_21016 | 535 | 3e-25 | 423 - 482 | 100 | 60 / 60 | plus |
Contig Sequence (535 bp)
>U35_21016 535 Hv_44K_v2 CGAACCTCCACCTCCTGGAACGCCGCCCCCAACAACTGGCGCTTCGGACAGACCTTTGAG GGCAAGAACTTCAGGGTCTGATCCCATCATCTTCTTCTCCGGCAACGGCCGGCCGCCCGC CTTACATATATAAACGACTGCTACTACTACTACATATACTAGCGACTAGTGAGTGAGTGA GTGAGTAATTACAAGGTTGGTGTGTTGTTTTTCCCGTCCTTGGTGGTGCGTGGCCTGTGA ATGCAGATGCAAGGTGCAAGCAGGTTCATACTTACTACGTACTACTACTAGTACTGGTAG CAAAAGTCTAGTCTTAATTAGAATGGTGAAGTGGGGAGAGTGGTGGCTGAAGTGGCTGCA AAGCTGCGGCTGAAAGATGGGAGCCCGCAGCTGCTGCTTCTCCGGTGTCCTTCCCGTGCC GTGTCATCTTTGTCTCCATGGCACGCTGCTGTTACCACTACTCTACTCTACTACGAGTAT TTATCAATCAATCAATCAATCATGGACCTGATTTATATAAAAAAAAAAAAAAAAA
Homology of Contig U35_21016 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |