- Probe CUST_23513_PI390587928
- Source Contig U35_36986
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23513_PI390587928 | Hv_44K_v2 | ATGACAACCAGCTGAAGTGGGAATTCGATGAGGACAATGACAGGCTGTATGTGACTTATC | 311 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.371 | 0.882 | 0.799 | 0.999 | 1.018 | 1.737 |
| Raw | 131.210 | 128.700 | 106.706 | 210.645 | 74.965 | 139.384 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_22454.1 | 276 | 8e-25 | 130 - 189 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC32530 | 569 | 3e-25 | 312 - 371 | 100 | 60 / 60 | plus | ABC32530 |
| Harvest21 | ABC20823 | 558 | 3e-25 | 301 - 360 | 100 | 60 / 60 | plus | ABC20823 |
| Harvest35 | U35_36986 | 569 | 3e-25 | 312 - 371 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9406 | 558 | 3e-25 | 301 - 360 | 100 | 60 / 60 | plus |
Contig Sequence (569 bp)
>U35_36986 569 Hv_44K_v2 GCTTCCCCTCGCGTCGTCAGATGGGCTCCAGGAACACCATCGCCATGAGAGGGCTCCGGT GAGCTCGGCTCGACGCCGGCAGCAGATCGGCCTCTTCTTCCTCTCCGTCAGCACCAGGAG CAAGAGGACGTTCGGGAGGTTTCATTTTCGTGAAGAGATCGGCGCCAGGAGCTGCTTCCA CGACGTCAACGACGAGCGGCTCTTCTTCCTCTCCGGCAAACACCTCCTGCACCTCCCGTC GTGGGCTCCTCTCCAGCGTCGGATGGGCTCTCTACCGCTAGGTAAAGGTTTCCCAGATGC AGGAGTTCCCGATGACAACCAGCTGAAGTGGGAATTCGATGAGGACAATGACAGGCTGTA TGTGACTTATCCCGAGGACTAGAGGCGCATGGTCGTGATCGTGGGATTAGCAAGATGGGA TAGCATATTTTGCTGTTTATCTTGTCCGTAGTCGGACCCTGCCTTATGTATGAATAATGA ATGCTTGCGTGGATTGTAATTTAGCATGTGGCAAGTGTAAGACGAATCTTATACTCATCT CTCTATTTATGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_36986 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |