barSeed - Barley Seed Development Database

Probe CUST_23510_PI390587928

Source Contig U35_48960

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23510_PI390587928	Hv_44K_v2	ATCCTTAGTTGACTTTGTTCGGTTGATCTGCCATTGACTGGATCAGCTCAAAGAGCAGAA	6	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.743	2.586	1.164	0.660	0.218	0.348
Raw	171.631	256.216	97.201	87.934	9.719	17.637

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79332.8	1021	2e-24	234 - 293	100	60 / 60	minus	None
MLOC	MLOC_79332.4	2411	2e-24	778 - 837	100	60 / 60	minus	ABC31742
MLOC	MLOC_79332.7	1856	2e-24	245 - 304	100	60 / 60	minus	None
MLOC	MLOC_79332.1	2713	2e-24	705 - 764	100	60 / 60	minus	ABC31742
MLOC	MLOC_79332.5	2161	2e-24	253 - 312	100	60 / 60	minus	None
MLOC	MLOC_79332.6	2258	2e-24	253 - 312	100	60 / 60	minus	None
JLOC1	JLOC1_52848.3	1685	8e-25	1470 - 1529	100	60 / 60	plus
JLOC1	JLOC1_52848.2	2221	8e-25	1470 - 1529	100	60 / 60	plus
JLOC1	JLOC1_52848.1	2324	8e-25	1573 - 1632	100	60 / 60	plus
Harvest21	ABC50818	654	3e-25	7 - 66	100	60 / 60	minus
Harvest35	U35_48960	654	3e-25	7 - 66	100	60 / 60	minus

Contig Sequence (654 bp)

>U35_48960 654 Hv_44K_v2
TAGGNCTTCTGCTCTTTGAGCTGATCCAGTCAATGGCAGATCAACCGAACAAAGTCAACT
AAGGATTATACAGCTTCTGGATGCTAAGGTGCAAGCAACAGCAAACAGAAGCAGATGCAC
TCTCTTTCCATGATCTGTACAACAACTATTCTGTACATCAGTGATCAGTCACTACTACAA
CAAGTCAAGTTGGTCACTGTCCATGTCCTCCTTCGCAAGCTTCTCAATCAACAGCTCCAT
TGTCCTGATGTACTTGGGCATGTAATGTTCCCCTACCATAGACCTCCCCAGACGAATCTT
GCTGTAGAGATGTCGAGGTGTCTCGTACAGGGTGACAACCTCCTCCCGCCTACCTTGCTC
ACTGGTGTTGGGTTCCTCTCCAGCTGGCAATGCAACCATGTGCAGTATTCTTCCTGGAGG
GTATAGCTGGAGGGAATCTTCAGAAGGGCTTGACGGTGACAGCTCCATTTGCTTGACCAG
GCCTTCACTTGAACCTTTCAGAGGTGATTTCAGAGGTGATTTGATATCCTCTTTGTCGGT
ATCTTCATTATCCGACGTATGAAGGTTTAACTCCCCAAAATAAATTGAGACTAACCCTGC
ATCAGCCGCTTCAGTGTCGTTTTTTTCAGTTTTACATCAATATCAGTTTGATTT

Homology of Contig U35_48960 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None