barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_23504_PI390587928Hv_44K_v2CAGCTCTGATGAAGAGAGGACGGAGAGCATATACTGTGTTTTACCACCCTAAGTAAAAAA19GeneList: greenyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 8.5375.8171.2380.7390.2260.384
Raw 2784.0233153.706557.590573.36656.464106.288



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK253052.116029e-221398 - 14599760 / 62plus ABC01192 ABC01198 ABC50840
MLOCMLOC_52040.221599e-221933 - 19949760 / 62plus ABC01192 ABC01198 ABC50840
JLOC1JLOC1_33291.215645e-221306 - 13679760 / 62plus
JLOC1JLOC1_33291.118045e-221546 - 16079760 / 62plus
Harvest21ABC508404783e-2520 - 7910060 / 60minusABC50840
Harvest21ABC0119816222e-221375 - 14369760 / 62plusABC01198
Harvest35U35_489694783e-2520 - 7910060 / 60minus
Harvest35U35_353758002e-22565 - 6269760 / 62plus
Harvest35U35_1381716252e-221378 - 14399760 / 62plus
Harvest35U35_137229928e-2142 - 1039559 / 62minus



Contig Sequence (478 bp)

>U35_48969 478 Hv_44K_v2
CAGTAAAACACTTCCAAGTTTTTTTACTTAGGGTGGTAAAACACAGTATATGCTCTCCGT
CCTCTCTTCATCAGAGCTGGTCTCGACCTGTAACAACGACGACACACTGGCTGGCTAAGG
TGCCCTCAAGCTGCTCAAGGCGCTACTAGCACTCTCCCTCCGTAGGTAGATTATGTAGAT
AGGACAGCTCGCCGACGGATCAGTAGCTGTAGTTCTTGACGAACATGTTCTCTTTGGCAG
CTGCGGCGCCCTCGCGTAGGAGAAGGACACGTGCCACGGGTTCGGCGCCTGGTTCATCGC
GTTCAGGTTCAGCGTCGCCTCCACCTCCGACTGTCCACCAGACAAGAACATGATGCCGGG
GACGGAAGGGGGGATCCTTCTCTGGAGGAGCTTGAGGGTGTAGCTGGCTACTTCCTCAGG
GGTGGCCCTGTCCTTGCACTCGGCACCAGGGGTCACCATGCTTGGCTTCAAGAGGATG



Homology of Contig U35_48969 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None