barSeed - Barley Seed Development Database

Probe CUST_23503_PI390587928

Source Contig U35_21020

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23503_PI390587928	Hv_44K_v2	ATGTGCGATGTGCTTTCTTCTTTCGCTTGCATGAAACTTTCCTGAGCCTTGTTTTTCAAA	1002	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.181	1.350	1.082	0.859	0.353	0.362
Raw	1770.633	3113.747	2213.907	2781.581	399.707	445.217

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_12053.1	2803	5e-22	2703 - 2760	98	57 / 58	plus
Harvest21	ABC14682	1076	3e-25	1003 - 1062	100	60 / 60	plus	ABC14682
Harvest35	U35_21020	1076	3e-25	1003 - 1062	100	60 / 60	plus

Contig Sequence (1076 bp)

>U35_21020 1076 Hv_44K_v2
GATGCTGAAAGGGAGGCTAAACGAGCAGTAGAGTTGGCTGATTTAGCTCGTGTAGAAGCT
GCTGCTGCTCAGAGAGACAAGGGTGAAGCACAGCGACTAGCAATGGAGAGACTCACTTTG
ATAGAAAGAATGGAGAGACAGGTTGAAACTCTAGAGCGAGAGAAAAGTAAGATGGTGGAA
GAAATGGAGCGACTTCATCAGTCTGAGTTGGATGCTCTATCCAAGGTCAGAATGCTTGAC
GAAAGGGTTGACGAGAGGGAAAAACAGATTGGGGAGATGTTGGAACAGAACAACCAGCAA
AGATCCAACACGGTCCAAGTGCTCGAGAGTCTACTGGCAACAGAGCGTGAAGCTTGTGCT
GAAGCCAACAAGAGAGCCGAATCCCTGTCACTGCAGCTGCAATCAACACAAGGCAAGCTG
GACATGCTCCAGCAGGAGCTCACCTCTGTTCGGCTCAATGAAACCGCGCTTGACAGCAAG
GTCAAGGCCTCATACTCTAGGCGCGCGAGGGGTGAAGCCACCGAGTCAGTCCATTACATG
GACGTCGATGATGACGACACTGGGAGGCGAAGGAAAAGATCGAAGAGCACAACGAGCCCG
TTCAAGAACAATCACACGGAGGATGGTGGATCCGTGTTCTTTGGAGAGGACACCAACAAC
GGGAGCCAGCAGCTGGAGGGGACAGAGACGGAGACTGAGGACTACACCAAGTTCACGGTG
CTGAAGCTGAAGCAGGAGCTGACCAAGCAAGGGTTCGGCGCCCAGCTGCTGCAGCTGAAG
AACCCCAACAAGAAGGACATTGTCGCCTTGTATGAGAAGCACATCGTTGGCGGCGCTTGA
CTGCTTCTTCCTCCACAATATGTAACAGCATTTTAACTCCTCGTGTGCTAATTCTAGATT
TCGTGCAGCGTCGTGTGCTGGTGACACGTTTTAGGTCAGAATGTAAAACAGGATATGTAA
CTTGGTGTGGGACTTGGTTTGTGGACTTTGTTCTTCAGGACCATGTGCGATGTGCTTTCT
TCTTTCGCTTGCATGAAACTTTCCTGAGCCTTGTTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21020 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48855.1	243	5e-121	protein\|GTP binding protein, putative, expressed
Brachypodium v1_2	Bradi2g16627.1	1067	2e-130
Arabidopsis v10	AT5G46070.1	1082	2e-56	Guanylate-binding family protein \| chr5:18683468-18688397 FORWARD LENGTH=1082