barSeed - Barley Seed Development Database

Probe CUST_23502_PI390587928

Source Contig U35_21021

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23502_PI390587928	Hv_44K_v2	GCAACTATCATGTACTATCTTTTTGTATCGTGGATTCGATGAATATCCACCCGGAAAAAA	452	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56340.1	631	7e-23	68 - 124	100	57 / 57	minus	ABC14388 ABC14389 ABC31634
JLOC1	JLOC1_36430.1	589	4e-23	43 - 99	100	57 / 57	minus
Harvest21	ABC14389	523	3e-25	453 - 512	100	60 / 60	plus	ABC14389
Harvest35	U35_21021	523	3e-25	453 - 512	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_21021 523 Hv_44K_v2
GAGGGATCCTTGCAGGGTTCGCCATGGAGTTCACGCTGACAAGCACCGCCACCGAGGTGC
TGGACAAGGCTGCCGCTCTCGCGGCCGCCGGCCTCGGCTTGGAAGGAGAAGCTCTCGGTG
CGTGGGGAACCGAGGAGAAGGCGACGGCGATCCGACGCTGGGCCAAGAAGCTTCTGGAGA
TGGAGAAGGCTGCTGCCCCCGTCGCTCCTGAGGTCGCTGGATCGGTTCCTCGCGCAGAGG
AGATCGGATCGGAAGTCAATCACGTCGGCGACGTGAAACGCGACGGCGGGGATCCCTCCA
TCCCCCCGGCCGTGCAAGATTCAGCGGTTAACTAGGATAAGCATGCAATAGCGAATTGTG
CCGTCCATGATTTATCTTAGCTCGTTTTACTTTTCTTCAATTCCAGTAATCCAGTTTCGT
TTAATTTTCTTCAATTCCAGTTTCGTTGTAGCGCAACTATCATGTACTATCTTTTTGTAT
CGTGGATTCGATGAATATCCACCCGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21021 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None