barSeed - Barley Seed Development Database

Probe CUST_23501_PI390587928

Source Contig U35_21022

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23501_PI390587928	Hv_44K_v2	GATCCACCCGGAAATTTTTCACATGTTCGGACAGCGGTTGTTACTCCCGTGCTTAAAAAA	536	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.518	1.186	1.395	0.857	0.266	0.182
Raw	1047.789	1287.471	1309.993	1305.100	137.319	104.596

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC14388	600	3e-25	537 - 596	100	60 / 60	plus	ABC14388
Harvest35	U35_21022	607	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (607 bp)

>U35_21022 607 Hv_44K_v2
GCAATCCCCGACCTCATTCTTCCTCTCTCTCCCTCCTTTCTGTCCAGATCCTTGCAGATT
TCGCCATGGAGTTCACTTTGACAAGCACCGCCACCGAGGTGCTGGACAAGGCTGCCGCTC
TCGCGGCTGCCGGCCTCGGCTTGGAAGGAGAAGCTCTCGGTGCTTGGGGGACCGAGGAGA
AGGCGACGGCGATCCGACGCTGGGCCAAGAAGCTTTCGGAGATGGAAAAGGCTGCTGCCC
CCGTCCCTCCTGAGGTCGCTGGATCGGTTCCTCGCGCAGAGGAGATCGGATCGGACGTCA
ATCACGTCGGCGACGTGAAACGCGACGGCGTGGATCCCTCCATCTCCGCGGCCGTGAAGG
ATTCAGCGGTTAACTAGGATAGGCATGCAATATCGAGTTGTGCTGTTCCAGATTTATCAT
AGCTCGTTTACTTTTCTTCAATTCCAGTAATCCAGTTTCGTTTAATTTTCTTCAATTCCA
GTTTCGTTGTAGGGCAACTATCATGTATTATCTTATTGTATCGTGGATTCGATGAAGATC
CACCCGGAAATTTTTCACATGTTCGGACAGCGGTTGTTACTCCCGTGCTTAAAAAAAAAA
AAAAAAA

Homology of Contig U35_21022 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None