barSeed - Barley Seed Development Database

Probe CUST_234_PI390587928

Source Contig U35_32058

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_234_PI390587928	Hv_44K_v2	CGACGGTGCCCGACTCCTGGGCCAGGAACAGGCACCCGGCGTCGGAGGAAGCGAAGGCGG	20	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354026	5414	2e-24	4072 - 4131	100	60 / 60	minus	ABC02915 ABC02916 ABC11995 ABC11996
MLOC	MLOC_48217.1	252	2e-24	88 - 147	100	60 / 60	minus	None
Harvest35	U35_32058	281	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (281 bp)

>U35_32058 281 Hv_44K_v2
CAAGGCCGTGTCCGTGCTGGCCGCCTTCGCTTCCTCCGACGCCGGGTGCCTGTTCCTGGC
CCAGGAGTCGGGCACCGTCGTTCCCCACCTCTGCCGCGCGCTGGAGTCCGGCGGTGCCAG
CGCAGAGCAGGCATGCGTCGCGCTGGAGCCGCTCACCGCCTCGTCGCGGGACGCAGCGGC
TGCCGTATCAGCGCGCGGCGGCGTGGCCGCGCTCCTCGTGGCTTGCGCCGCCGGCACCCC
GGCGTCCAGGCCGCCGCCGCGGCGTCTCCGGAACATCGCCG

Homology of Contig U35_32058 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None