barSeed - Barley Seed Development Database

Probe CUST_23484_PI390587928

Source Contig U35_36997

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23484_PI390587928	Hv_44K_v2	TCTGGTAACTTCAGTCCAGATGACCAGCATAATACTTGGTTACCAGGTGGCAGATCATTA	63	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37025.5	5413	2e-24	943 - 1002	100	60 / 60	minus	None
MLOC	MLOC_37025.6	5488	2e-24	1018 - 1077	100	60 / 60	minus	None
MLOC	MLOC_37025.1	4765	2e-24	604 - 663	100	60 / 60	minus	None
MLOC	MLOC_37025.9	4947	2e-24	509 - 568	100	60 / 60	minus	ABC12752
MLOC	MLOC_37025.10	4940	2e-24	678 - 737	100	60 / 60	minus	None
MLOC	MLOC_37025.8	4815	2e-24	563 - 622	100	60 / 60	minus	None
MLOC	MLOC_37025.3	4902	2e-24	433 - 492	100	60 / 60	minus	None
MLOC	MLOC_37025.7	5166	2e-24	800 - 859	100	60 / 60	minus	ABC12752
MLOC	MLOC_37025.11	5157	2e-24	663 - 722	100	60 / 60	minus	None
MLOC	MLOC_37025.4	5417	2e-24	948 - 1007	100	60 / 60	minus	None
MLOC	MLOC_37025.2	5072	2e-24	578 - 637	100	60 / 60	minus	None
JLOC1	JLOC1_23919.7	5045	8e-25	4407 - 4466	100	60 / 60	plus
JLOC1	JLOC1_23919.6	5010	8e-25	4372 - 4431	100	60 / 60	plus
JLOC1	JLOC1_23919.5	5249	8e-25	4393 - 4452	100	60 / 60	plus
JLOC1	JLOC1_23919.4	5338	8e-25	4407 - 4466	100	60 / 60	plus
JLOC1	JLOC1_23919.3	5190	8e-25	4401 - 4460	100	60 / 60	plus
JLOC1	JLOC1_23919.2	5257	8e-25	4401 - 4460	100	60 / 60	plus
JLOC1	JLOC1_23919.1	5302	8e-25	4371 - 4430	100	60 / 60	plus
Harvest21	ABC32543	539	3e-25	64 - 123	100	60 / 60	plus
Harvest35	U35_36997	539	3e-25	64 - 123	100	60 / 60	plus

Contig Sequence (539 bp)

>U35_36997 539 Hv_44K_v2
GGTGTACAACCCTTTCCAAATAGCCAAAGCCAGTATACATCGGAAGAACAGTGGCGAATG
GCATCTGGTAACTTCAGTCCAGATGACCAGCATAATACTTGGTTACCAGGTGGCAGATCA
TTATCTTGCTCAGATGGGTCATTCATGCAGGATGGATATCCGAGGTCGAACATTGACAGA
TCTTCAATGAATTCAATGAGTCATCAACATGCTGTACTTAACCATTTGCCATCTGGAGCA
CCACATCCAGGCCATGTTGTTCCTCACATGCTGCCAGCCAAGCCTGATATTCATGCACTT
AATTGCTGGAGGCCTTCTGGATGAACTTGTATAATTAACTATGCGGTTTTGACATGGGAA
ATTGGAGAAGTTGGGAGCCATTTTAAATGGGGATGCAACAAGAGGTGCTTATGTTAGCCT
GTTCCGCGATGAGGATGTACTTTTGCCTGGGGAGTAATGATGAGATCTGATGTTAGTAAT
TGGAATGGACATTNTACATTGTAATTAGTCTTGACAGCGGCATCCAGCAGACTAATTGC

Homology of Contig U35_36997 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01054.2	1429	1e-53	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g12902.1	1438	2e-60
Arabidopsis v10	None