barSeed - Barley Seed Development Database

Probe CUST_23483_PI390587928

Source Contig U35_33005

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23483_PI390587928	Hv_44K_v2	ACGTTCCTCCGAAAATTGGGCCAGCTACCATGGATGATCATCATAGCAAAGAAGCTGTAA	276	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.047	1.447	1.075	0.815	0.582	0.552
Raw	1326.434	1335.253	951.844	1049.268	278.530	290.713

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55652.1	1841	2e-24	746 - 805	100	60 / 60	plus	ABC13718
MLOC	MLOC_55652.2	864	2e-24	731 - 790	100	60 / 60	minus	ABC13718
MLOC	MLOC_55652.3	1555	2e-24	731 - 790	100	60 / 60	minus	ABC13718
MLOC	MLOC_55652.4	1526	2e-24	731 - 790	100	60 / 60	minus	ABC13718
JLOC1	JLOC1_35926.2	2521	8e-25	737 - 796	100	60 / 60	plus
JLOC1	JLOC1_35926.1	2141	8e-25	736 - 795	100	60 / 60	plus
Harvest35	U35_33005	336	3e-25	277 - 336	100	60 / 60	plus

Contig Sequence (336 bp)

>U35_33005 336 Hv_44K_v2
TGGCAAAGCACCACCTGCTGCTGAGCTACTGCCAGGACCTCGTCTACTACCTGCTACGCA
AGGCCAAGGGGCTGTCCGTTGACGGCCACCCCGTTGTGCGCAGCCTTGTCAAGATCAGGC
TGTTTCTTGAGAAGATTCGCCCGATAGACAAGAAGATGGAGTACCAGATCCAGAAGCTCA
CCTGCAGATGGTGCAGCTGCCCAGGATAAGGTGCCAGACACTGTTTGCCACTCTGTGTTC
ACACAGAGACACACACACCAGGCAAAGATGGTATCTACGTTCCTCCGAAAATTGGGCCAG
CTACCATGGATGATCATCATAGCAAAGAAGCTGTAA

Homology of Contig U35_33005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None