barSeed - Barley Seed Development Database

Probe CUST_23479_PI390587928

Source Contig U35_33007

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_23479_PI390587928	Hv_44K_v2	TGCAGCCTTACAGGATTGTTGTTATAGCCACATGTTGATCAAAAGATCAAATTGCAAAAT	30	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.114	0.107	0.689	1.970	1.445	1.972
Raw	2.690	5.030	41.960	178.189	47.881	72.003

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54794.6	4309	2e-24	97 - 156	100	60 / 60	minus	None
MLOC	MLOC_54794.5	3356	2e-24	97 - 156	100	60 / 60	minus	None
MLOC	MLOC_54794.8	4509	2e-24	75 - 134	100	60 / 60	minus	None
MLOC	MLOC_54794.10	1245	2e-24	32 - 91	100	60 / 60	minus	None
MLOC	MLOC_54794.7	4215	2e-24	80 - 139	100	60 / 60	minus	None
MLOC	MLOC_54794.9	6061	2e-24	50 - 109	100	60 / 60	minus	None
JLOC1	JLOC1_35289.2	837	8e-25	79 - 138	100	60 / 60	minus
JLOC1	JLOC1_35290.3	4259	8e-25	4086 - 4145	100	60 / 60	plus
JLOC1	JLOC1_35290.2	4442	8e-25	4269 - 4328	100	60 / 60	plus
JLOC1	JLOC1_35290.1	4172	8e-25	3999 - 4058	100	60 / 60	plus
Harvest35	U35_33007	443	3e-25	31 - 90	100	60 / 60	minus

Contig Sequence (443 bp)

>U35_33007 443 Hv_44K_v2
TACGCTTTTACACATTCTAATCACATGTACATTTTGCAATTTGATCTTTTGATCAACATG
TGGCTATAACAACAATCCTGTAAGGCTGCACTAGTAGTACATATACAAATTCTCACACAA
ATCATGTGGTTATTTACACACTTCATCCTGCAGCAGCAAAATCCTTGTGGTCTTGTGCTT
ATTTATGATTGGGTGTTTCTCTTCTCTTAGCCGTATACAATTATAAGCAATGTACTGATT
AGTGTATTTGCAGTTTGCAGTTCAATCTGTCCATGCTACCTCCGCTGGAACTTTAGGTGC
TTGATGAAGATGAAGAAGAGGAAGGCGAACAGGGCGATGATGGCCAGGTGCAGGCAGGTG
ACAAGGTTGAAGTAGCGGTTCTCGAGGCCAAGGTAGCCCTCGAGGAACTCACGCACCGTC
TGGTCTGGCTGCCCTGCANCGTG

Homology of Contig U35_33007 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None