- Probe CUST_23471_PI390587928
- Source Contig U35_48976
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_23471_PI390587928 | Hv_44K_v2 | TTGGCCCATTGGCTGTAGAATCACATTTGTAACACAAATACACTGACTCGTTTATTTGTT | 30 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58614.1 | 2181 | 7e-23 | 1069 - 1129 | 98 | 60 / 61 | plus | ABC36667 |
| MLOC | MLOC_58610.4 | 2268 | 7e-23 | 1388 - 1448 | 98 | 60 / 61 | plus | ABC36667 |
| MLOC | MLOC_58610.3 | 1565 | 7e-23 | 1470 - 1530 | 98 | 60 / 61 | plus | None |
| MLOC | MLOC_58610.5 | 2234 | 7e-23 | 1360 - 1420 | 98 | 60 / 61 | plus | ABC36667 |
| MLOC | MLOC_58610.1 | 1578 | 7e-23 | 1468 - 1528 | 98 | 60 / 61 | plus | None |
| MLOC | MLOC_58610.2 | 1635 | 7e-23 | 1537 - 1597 | 98 | 60 / 61 | plus | None |
| JLOC1 | JLOC1_38097.3 | 3162 | 4e-23 | 1987 - 2047 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_38097.2 | 2918 | 4e-23 | 1743 - 1803 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_38097.1 | 3126 | 4e-23 | 1951 - 2011 | 98 | 60 / 61 | minus | |
| JLOC1 | JLOC1_38096.5 | 2476 | 4e-23 | 1595 - 1655 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_38096.4 | 2223 | 4e-23 | 1342 - 1402 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_38096.3 | 2381 | 4e-23 | 1500 - 1560 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_38096.2 | 2352 | 4e-23 | 1471 - 1531 | 98 | 60 / 61 | plus | |
| JLOC1 | JLOC1_38096.1 | 2266 | 4e-23 | 1385 - 1445 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC50855 | 754 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_48976 | 754 | 3e-25 | 31 - 90 | 100 | 60 / 60 | minus |
Contig Sequence (754 bp)
>U35_48976 754 Hv_44K_v2 ATTGTGGATACTCCTTATTGCACGTTATTAAACAAATAAACGAGTCAGTGTATTTGTGTT ACAAATGTGATTCTACAGCCAATGGGCCAACCTCTCCACTAACTTTGACACTCACTGCAC CTCAATCTACCACTTGTTTAATCCAAACACTTAATTAAGTTACAACAACTAATGCGCCAT ACCTCGGCTCTCTTTTAAAAAAAAATACAACAAGAGATGCATCTGTCATGAGCTTGCAGA GCTCAATTGGTGTGGCCATGGGTACACAAGAATCACCCTGTTATAATCTGTCAAGGGCAT CGACGATGGCCTTGCGAAACGAGTCGTTGTGGAGTAAAAAAGAGGACACATGGCCTCCCA TCACCCACCGGACTTCTGAGCCCGGCCATGCCTTCTGGAGCTCCATGACCGAGTGTCTAG GAATATAACCGTCATCCGTTGCACCAACAAAAATGACGGCCTGTGGATTCTTCGGTAGGG GAAACCGAGTGACGTCCGTCAGAGATAGCACTGACCGTAATCTGTCTTTTACTTGCTCAA TAGTGATTCCGGATGCCGCATCTTCGGACAAAGAAGTTGCATCTTTAGCTAATGCTGCTG CATCTTCTCTCAGTGCTTCCCAAGCTGTGGCATGTCTGTAAAGTCCTTCACAGAAAGGTA CCACAGCAGAATGTGGAGCAAGAAATGGTAGTGTGGCAATTGGCGTAGGATGCAAGGATC CTACCATTGCAGCATGTACGCCACCCATGCTGAG
Homology of Contig U35_48976 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g10160.1 | 367 | 1e-95 | protein|AGAP003371-PA, putative, expressed |
| Brachypodium v1_2 | Bradi3g07040.2 | 367 | 6e-99 | |
| Arabidopsis v10 | AT3G12150.1 | 363 | 8e-76 | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr3:3876688-3878621 REVERSE LENGTH=363 |